Evidence map›Paper›PMID 39092674›Full record

ArticleAging cell2024

Retro-age: A unique epigenetic biomarker of aging captured by DNA methylation states of retroelements.

Lishomwa C Ndhlovu, Matthew L Bendall, Varun Dwaraka, Alina P S Pang, Nicholas Dopkins, Natalia Carreras, Ryan Smith, Douglas F Nixon, Michael J Corley

Abstract read
In one paragraph

Article in Aging cell, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed.

  1. Trial
  2. Trial
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Human Brain Cell-Type-Specific Aging Clocks Based on Single-Nuclei Transcriptomics.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Lishomwa C NdhlovuDepartment of Medicine, Division of Infectious Diseases, Weill Cornell Medicine, New York, New York City, USA.ORCID 0000-0001-5427-4187
Matthew L BendallDepartment of Medicine, Division of Infectious Diseases, Weill Cornell Medicine, New York, New York City, USA.
Varun DwarakaTruDiagnostic, Lexington, Kentucky, USA.
Alina P S PangDepartment of Medicine, Division of Infectious Diseases, Weill Cornell Medicine, New York, New York City, USA.
Nicholas DopkinsDepartment of Medicine, Division of Infectious Diseases, Weill Cornell Medicine, New York, New York City, USA.
Natalia CarrerasTruDiagnostic, Lexington, Kentucky, USA.
Ryan SmithTruDiagnostic, Lexington, Kentucky, USA.
Douglas F NixonDepartment of Medicine, Division of Infectious Diseases, Weill Cornell Medicine, New York, New York City, USA.
Michael J CorleyDepartment of Medicine, Division of Infectious Diseases, Weill Cornell Medicine, New York, New York City, USA.ORCID 0000-0001-8957-7153

Funding

HOPE - HIV Obstruction by Programmed EpigeneticsUM1AI164559 · NIAID · J. DAVID GLADSTONE INSTITUTES · PI Lishomwa C Ndhlovu, Melanie Maria Ott · 2021 to 2026
$32.2M
Harnessing Single Cell Epigenome-wide profiling of Myeloid cells to Compare and Contrast Alzheimer's from HIV-Associated Cognitive DysfunctionR01AG063846 · NIA · WEILL MEDICAL COLL OF CORNELL UNIV · PI NDHLOVU, LISHOMWA C, VALCOUR, VICTOR · 2020 to 2024
$4.4M
Decoding epigenetic scars of smoldering neuroinflammation and CNS complications in people with HIVR01MH134391 · NIMH · WEILL MEDICAL COLL OF CORNELL UNIV · PI Michael Jay Corley, Shelli Farhadian · 2023 to 2026
$3.8M
Development of Brain Organoids to Study the Impact of HIV-1, Drugs of Abuseand Aging on Cognitive ImpairmentR01DA052027 · NIDA · WEILL MEDICAL COLL OF CORNELL UNIV · PI NIXON, DOUGLAS F · 2020 to 2024
$3.7M
Social epigenetics of Alzheimer's disease and related dementias in Latin American countriesR01AG082056 · NIA · WEILL MEDICAL COLL OF CORNELL UNIV · PI Michael Jay Corley · 2024 to 2026
$3.6M
Investigating Cellular Immunometabolic Mechanisms Underlying HIV-Related Cardiovascular Disease RiskR01HL160392 · NHLBI · WEILL MEDICAL COLL OF CORNELL UNIV · PI CORLEY, MICHAEL JAY · 2021 to 2024
$2.3M
The Role of Transposable Elements in Healthy Aging and in Alzheimer's DiseaseR56AG078970 · NIA · WEILL MEDICAL COLL OF CORNELL UNIV · PI NIXON, DOUGLAS F · 2022 to 2022
$1.4M
NHLBI NIH HHS R01 HL160392NIAID NIH HHS UM1 AI164559NIA NIH HHS R01 AG063846NIA NIH HHS R01 AG082056NIA NIH HHS R56 AG078970NIDA NIH HHS R01 DA052027NIH HHS R01AG082056NIH HHS R01HL160392NIH HHS R01MH134391NIH HHS UM1AI164559NIMH NIH HHS R01 MH134391
6 · The paper itself

Abstract

Reactivation of retroelements in the human genome has been linked to aging. However, whether the epigenetic state of specific retroelements can predict chronological age remains unknown. We provide evidence that locus-specific retroelement DNA methylation can be used to create retroelement-based epigenetic clocks that accurately measure chronological age in the immune system, across human tissues, and pan-mammalian species. We also developed a highly accurate retroelement epigenetic clock compatible with EPICv.2.0 data that was constructed from CpGs that did not overlap with existing first- and second-generation epigenetic clocks, suggesting a unique signal for epigenetic clocks not previously captured. We found retroelement-based epigenetic clocks were reversed during transient epigenetic reprogramming, accelerated in people living with HIV-1, and responsive to antiretroviral therapy. Our findings highlight the utility of retroelement-based biomarkers of aging and support a renewed emphasis on the role of retroelements in geroscience.

Indexed as

AgingDNA MethylationEpigenesis, GeneticRetroelementsAdultAgedAnimalsBiomarkersFemaleHumansMaleMiddle AgedBiomarkersRetroelementsagingbiomarkerDNA methylationendogenous retrovirusepigenetic clockepigeneticsretroelement

Identifiers

PMID39092674
PMCPMC11464121

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.