Evidence map›Paper›PMID 39091746›Full record

ArticlebioRxiv : the preprint server for biology2024

Resolving artefacts in voltage-clamp experiments with computational modelling: an application to fast sodium current recordings.

Chon Lok Lei, Alexander P Clark, Michael Clerx, Siyu Wei, Meye Bloothooft, Teun P de Boer, David J Christini, Trine Krogh-Madsen, Gary R Mirams

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Chon Lok LeiInstitute of Translational Medicine, Faculty of Health Sciences, University of Macau, Macau, China.ORCID 0000-0003-0904-554X
Alexander P ClarkDepartment of Biomedical Engineering, Cornell University, Ithaca, NY, USA.ORCID 0000-0002-5200-6573
Michael ClerxCentre for Mathematical Medicine & Biology, School of Mathematical Sciences, University of Nottingham, Nottingham, UK.ORCID 0000-0003-4062-3061
Siyu WeiDepartment of Physiology & Pharmacology, SUNY Downstate Health Sciences University, Brooklyn, NY, USA.ORCID 0000-0003-1085-6788
Meye BloothooftDepartment of Medical Physiology, Division of Heart and Lungs, University Medical Center Utrecht, Utrecht, Netherlands.ORCID 0000-0003-0614-8885
Teun P de BoerDepartment of Medical Physiology, Division of Heart and Lungs, University Medical Center Utrecht, Utrecht, Netherlands.ORCID 0000-0002-0561-6491
David J ChristiniDepartment of Physiology & Pharmacology, SUNY Downstate Health Sciences University, Brooklyn, NY, USA.ORCID 0000-0003-0852-2922
Trine Krogh-MadsenDepartment of Physiology & Pharmacology, SUNY Downstate Health Sciences University, Brooklyn, NY, USA.ORCID 0000-0003-2298-6918
Gary R MiramsCentre for Mathematical Medicine & Biology, School of Mathematical Sciences, University of Nottingham, Nottingham, UK.ORCID 0000-0002-4569-4312

Funding

Multiscale modeling to map cardiac electrophysiology between speciesU01HL136297 · NHLBI · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI CHRISTINI, DAVID J., SOBIE, ERIC A · 2017 to 2021
$3.2M
Predicting Drug Cardiotoxicity Targets Using iPSC-Derived Cardiomyocytes and Machine LearningF31HL154655 · NHLBI · CORNELL UNIVERSITY · PI CLARK, ALEXANDER P · 2020 to 2022
$99k
NHLBI NIH HHS F31 HL154655NHLBI NIH HHS U01 HL136297Wellcome Trust
6 · The paper itself

Abstract

Cellular electrophysiology is the foundation of many fields, from basic science in neurology, cardiology, oncology to safety critical applications for drug safety testing, clinical phenotyping, etc. Patch-clamp voltage clamp is the gold standard technique for studying cellular electrophysiology. Yet, the quality of these experiments is not always transparent, which may lead to erroneous conclusions for studies and applications. Here, we have developed a new computational approach that allows us to explain and predict the experimental artefacts in voltage-clamp experiments. The computational model captures the experimental procedure and its inadequacies, including: voltage offset, series resistance, membrane capacitance and (imperfect) amplifier compensations, such as series resistance compensation and supercharging. The computational model was validated through a series of electrical model cell experiments. Using this computational approach, the artefacts in voltage-clamp experiments of cardiac fast sodium current, one of the most challenging currents to voltage clamp, were able to be resolved and explained through coupling the observed current and the simulated membrane voltage, including some typically observed shifts and delays in the recorded currents. We further demonstrated that the typical way of averaging data for current-voltage relationships would lead to biases in the peak current and shifts in the peak voltage, and such biases can be in the same order of magnitude as those differences reported for disease-causing mutations. Therefore, the presented new computational pipeline will provide a new standard of assessing the voltage-clamp experiments and interpreting the experimental data, which may be able to rectify and provide a better understanding of ion channel mutations and other related applications.

Indexed as

computational modelexperimental errorfast sodium currentpatch clampvoltage clamp

Identifiers

PMID39091746
PMCPMC11291073

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.