Evidence map›Paper›PMID 39090390›Full record

ArticleNature microbiology2024

Differential rates of Mycobacterium tuberculosis transmission associate with host-pathogen sympatry.

Matthias I Gröschel, Francy J Pérez-Llanos, Roland Diel, Roger Vargas, Vincent Escuyer, Kimberlee Musser, Lisa Trieu, Jeanne Sullivan Meissner, Jillian Knorr, Don Klinkenberg and 8 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Host- and pathogen-related determinants of pulmonaryEuropean respiratory review : an official journal of the European Respiratory Society · 2026
    Review
  8. Article
  9. Article
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. A year of microbiology.Nature microbiology · 2024
    Article
  16. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Matthias I Gröschel *Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA. matthias_groeschel@hms.harvard.edu.ORCID http://orcid.org/0000-0002-2509-3034
Francy J Pérez-Llanos *Molecular and Experimental Mycobacteriology, Research Center Borstel, Borstel, Germany.ORCID http://orcid.org/0000-0002-9488-0904
Roland DielInstitute for Epidemiology, University Medical Hospital Schleswig-Holstein, Kiel, Germany.
Roger VargasDepartment of Biomedical Informatics, Harvard Medical School, Boston, MA, USA.ORCID http://orcid.org/0000-0002-7116-5211
Vincent EscuyerWadsworth Center, New York State Department of Health, Albany, NY, USA.
Kimberlee MusserWadsworth Center, New York State Department of Health, Albany, NY, USA.
Lisa TrieuNew York City Department of Health and Mental Hygiene, New York, NY, USA.
Jeanne Sullivan MeissnerNew York City Department of Health and Mental Hygiene, New York, NY, USA.
Jillian KnorrNew York City Department of Health and Mental Hygiene, New York, NY, USA.
Don KlinkenbergCenter for Infectious Disease Control, National Institute for Public Health and the Environment (RIVM), Bilthoven, The Netherlands.ORCID http://orcid.org/0000-0002-9449-6873
Peter KouwDepartment of Tuberculosis, Public Health Service, Amsterdam, The Netherlands.
Susanne HomolkaDiagnostic Mycobacteriology, National and Supranational Reference Center for Mycobacteria, Research Center Borstel, Borstel, Germany.ORCID http://orcid.org/0000-0003-4972-5638
Wojciech SamekDepartment of Electrical Engineering and Computer Science, Technical University Berlin, Berlin, Germany.
Barun MathemaMailman School of Public Health, Columbia University, New York City, NY, USA.
Dick van SoolingenCenter for Infectious Disease Control, National Institute for Public Health and the Environment (RIVM), Bilthoven, The Netherlands.
Stefan Niemann *Molecular and Experimental Mycobacteriology, Research Center Borstel, Borstel, Germany.ORCID http://orcid.org/0000-0002-6604-0684
Shama Desai AhujaNew York City Department of Health and Mental Hygiene, New York, NY, USA.
Maha R Farhat *Department of Biomedical Informatics, Harvard Medical School, Boston, MA, USA. maha_farhat@hms.harvard.edu.ORCID http://orcid.org/0000-0002-3871-5760

Funding

Human adaptation and transmissibility of Mycobacterium tuberculosis genetic lineages. A genomic epidemiology study to guide TB controlR21AI154089 · NIAID · HARVARD MEDICAL SCHOOL · PI FARHAT, MAHA · 2021 to 2022
$466k
Deutsche Forschungsgemeinschaft (German Research Foundation) GR5643/1-1NIAID NIH HHS R21 AI154089
6 · The paper itself

Abstract

Several human-adapted Mycobacterium tuberculosis complex (Mtbc) lineages exhibit a restricted geographical distribution globally. These lineages are hypothesized to transmit more effectively among sympatric hosts, that is, those that share the same geographical area, though this is yet to be confirmed while controlling for exposure, social networks and disease risk after exposure. Using pathogen genomic and contact tracing data from 2,279 tuberculosis cases linked to 12,749 contacts from three low-incidence cities, we show that geographically restricted Mtbc lineages were less transmissible than lineages that have a widespread global distribution. Allopatric host-pathogen exposure, in which the restricted pathogen and host are from non-overlapping areas, had a 38% decrease in the odds of infection among contacts compared with sympatric exposures. We measure tenfold lower uptake of geographically restricted lineage 6 strains compared with widespread lineage 4 strains in allopatric macrophage infections. We conclude that Mtbc strain-human long-term coexistence has resulted in differential transmissibility of Mtbc lineages and that this differs by human population.

Indexed as

Host-Pathogen InteractionsMycobacterium tuberculosisSympatryTuberculosisAdultContact TracingFemaleHumansIncidenceMacrophagesMalePhylogeny

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.