Evidence map›Paper›PMID 39090312›Full record

ArticleNature chemical biology2025

Photoproximity labeling of endogenous receptors in the live mouse brain in minutes.

Mikiko Takato, Seiji Sakamoto, Hiroshi Nonaka, Fátima Yuri Tanimura Valor, Tomonori Tamura, Itaru Hamachi

Erratum issuedAbstract read
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In one paragraph

Article in Nature chemical biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Chemical Biology 2025: Highlights From the Ch/Bi145 Course at Caltech.Chembiochem : a European journal of chemical biology · 2026
    Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Review
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  10. Article
  11. Progress toward a comprehensive brain protein interactome.Biochemical Society transactions · 2025
    Review
  12. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Mikiko TakatoDepartment of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Kyoto, Japan.
Seiji SakamotoDepartment of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Kyoto, Japan.
Hiroshi NonakaDepartment of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Kyoto, Japan.ORCID 0000-0003-4623-2926
Fátima Yuri Tanimura ValorDepartment of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Kyoto, Japan.
Tomonori TamuraDepartment of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Kyoto, Japan. tamura@sbchem.kyoto-u.ac.jp.ORCID 0000-0003-1648-9296
Itaru HamachiDepartment of Synthetic Chemistry and Biological Chemistry, Graduate School of Engineering, Kyoto University, Kyoto, Japan. ihamachi@sbchem.kyoto-u.ac.jp.ORCID 0000-0002-3327-3916

Funding

Japan Agency for Medical Research and Development (AMED) JP22am0401006MEXT | Japan Society for the Promotion of Science (JSPS) 19H05764MEXT | Japan Society for the Promotion of Science (JSPS) 21H02058MEXT | Japan Society for the Promotion of Science (JSPS) 21J23228MEXT | Japan Society for the Promotion of Science (JSPS) 23H05405MEXT | JST | Core Research for Evolutional Science and Technology (CREST) JPMJCR1854MEXT | JST | Exploratory Research for Advanced Technology (ERATO) JPMJER1802
6 · The paper itself

Abstract

Understanding how protein-protein interaction networks in the brain give rise to cognitive functions necessitates their characterization in live animals. However, tools available for this purpose require potentially disruptive genetic modifications and lack the temporal resolution necessary to track rapid changes in vivo. Here we leverage affinity-based targeting and photocatalyzed singlet oxygen generation to identify neurotransmitter receptor-proximal proteins in the live mouse brain using only small-molecule reagents and minutes of photoirradiation. Our photooxidation-driven proximity labeling for proteome identification (named PhoxID) method not only recapitulated the known interactomes of three endogenous neurotransmitter receptors (α-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid receptor (AMPAR), inhibitory γ-aminobutyric acid type A receptor and ionotropic glutamate receptor delta-2) but also uncovered age-dependent shifts, identifying NECTIN3 and IGSF3 as developmentally regulated AMPAR-proximal proteins in the cerebellum. Overall, this work establishes a flexible and generalizable platform to study receptor microenvironments in genetically intact specimens with an unprecedented temporal resolution.

Indexed as

BrainAnimalsMiceMice, Inbred C57BLPhotochemical ProcessesProteomeReceptors, AMPAReceptors, NeurotransmitterProteomeReceptors, AMPAReceptors, Neurotransmitter

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.