Evidence map›Paper›PMID 39090154›Full record

ArticleNature communications2024

Structural insights into strigolactone catabolism by carboxylesterases reveal a conserved conformational regulation.

Malathy Palayam, Linyi Yan, Ugrappa Nagalakshmi, Amelia K Gilio, David Cornu, François-Didier Boyer, Savithramma P Dinesh-Kumar, Nitzan Shabek

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Negative feedback regulation of karrikin signaling inProceedings of the National Academy of Sciences of the United States of America · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Malathy PalayamDepartment of Plant Biology, College of Biological Sciences, University of California-Davis, Davis, CA, USA.ORCID 0000-0001-7031-947X
Linyi YanDepartment of Plant Biology, College of Biological Sciences, University of California-Davis, Davis, CA, USA.
Ugrappa NagalakshmiDepartment of Plant Biology, College of Biological Sciences, University of California-Davis, Davis, CA, USA.
Amelia K GilioDepartment of Plant Biology, College of Biological Sciences, University of California-Davis, Davis, CA, USA.
David CornuInstitute for Integrative Biology of the Cell (I2BC), Université Paris-Saclay, CEA, CNRS, Gif-sur-Yvette, France.
François-Didier BoyerInstitut de Chimie des Substances Naturelles, Université Paris-Saclay, CNRS UPR 2301, Gif-sur-Yvette, France.ORCID 0000-0001-9855-7234
Savithramma P Dinesh-KumarDepartment of Plant Biology, College of Biological Sciences, University of California-Davis, Davis, CA, USA.ORCID 0000-0001-5738-316X
Nitzan ShabekDepartment of Plant Biology, College of Biological Sciences, University of California-Davis, Davis, CA, USA. nshabek@ucdavis.edu.ORCID 0000-0002-2190-5955

Funding

User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI Gregory L Hura · 2017 to 2026
$28.6M
National Science Foundation (NSF) 2028283NIGMS NIH HHS P30 GM124169
6 · The paper itself

Abstract

Phytohormone levels are regulated through specialized enzymes, participating not only in their biosynthesis but also in post-signaling processes for signal inactivation and cue depletion. Arabidopsis thaliana (At) carboxylesterase 15 (CXE15) and carboxylesterase 20 (CXE20) have been shown to deplete strigolactones (SLs) that coordinate various growth and developmental processes and function as signaling molecules in the rhizosphere. Here, we elucidate the X-ray crystal structures of AtCXE15 (both apo and SL intermediate bound) and AtCXE20, revealing insights into the mechanisms of SL binding and catabolism. The N-terminal regions of CXE15 and CXE20 exhibit distinct secondary structures, with CXE15 characterized by an alpha helix and CXE20 by an alpha/beta fold. These structural differences play pivotal roles in regulating variable SL hydrolysis rates. Our findings, both in vitro and in planta, indicate that a transition of the N-terminal helix domain of CXE15 between open and closed forms facilitates robust SL hydrolysis. The results not only illuminate the distinctive process of phytohormone breakdown but also uncover a molecular architecture and mode of plasticity within a specific class of carboxylesterases.

Indexed as

ArabidopsisArabidopsis ProteinsCarboxylic Ester HydrolasesLactonesCrystallography, X-RayHydrolysisModels, MolecularPlant Growth RegulatorsProtein ConformationArabidopsis ProteinsCarboxylic Ester HydrolasesLactonesPlant Growth Regulators

Identifiers

PMID39090154
PMCPMC11294565

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.