Evidence map›Paper›PMID 39090102›Full record

ArticleNature communications2024

The unique allosteric property of crocodilian haemoglobin elucidated by cryo-EM.

Katsuya Takahashi, Yongchan Lee, Angela Fago, Naim M Bautista, Jay F Storz, Akihiro Kawamoto, Genji Kurisu, Tomohiro Nishizawa, Jeremy R H Tame

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Hemoglobin as an oxygen gasoreceptor.Acta biochimica Polonica · 2025
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Katsuya TakahashiGraduate School of Medical Life Science, Yokohama City University, Suehiro 1-7-29, Yokohama, 230-0045, Japan.ORCID 0000-0003-2028-244X
Yongchan LeeGraduate School of Medical Life Science, Yokohama City University, Suehiro 1-7-29, Yokohama, 230-0045, Japan.ORCID 0000-0002-1507-805X
Angela FagoDepartment of Biology, Aarhus University, C. F. Møllers Alle 3, Aarhus, DK-8000, Aarhus C, Denmark.ORCID 0000-0001-7315-2628
Naim M BautistaSchool of Biological Sciences, University of Nebraska, 1104 T St., Lincoln, NE 68588-0118, NE, USA.
Jay F StorzSchool of Biological Sciences, University of Nebraska, 1104 T St., Lincoln, NE 68588-0118, NE, USA.ORCID 0000-0001-5448-7924
Akihiro KawamotoInstitute for Protein Research, Osaka University, 3-2, Yamadaoka, Suita, Osaka, 565-0871, Japan.ORCID 0000-0002-7380-0127
Genji KurisuInstitute for Protein Research, Osaka University, 3-2, Yamadaoka, Suita, Osaka, 565-0871, Japan.ORCID 0000-0002-5354-0807
Tomohiro NishizawaGraduate School of Medical Life Science, Yokohama City University, Suehiro 1-7-29, Yokohama, 230-0045, Japan. t-2438@yokohama-cu.ac.jp.ORCID 0000-0001-7463-8398
Jeremy R H TameGraduate School of Medical Life Science, Yokohama City University, Suehiro 1-7-29, Yokohama, 230-0045, Japan. jtame@yokohama-cu.ac.jp.ORCID 0000-0002-9341-7280

Funding

Mutational Pleiotropy, Epistasis, and the Adaptive Evolution of Hemoglobin FunctionR01HL087216 · NHLBI · UNIVERSITY OF NEBRASKA LINCOLN · PI STORZ, JAY · 2008 to 2021
$4.5M
Aarhus Universitets Forskningsfond (Aarhus University Research Foundation) AUFF-E-2023-9-55Japan Agency for Medical Research and Development (AMED) JP22ama121001MEXT | Japan Science and Technology Agency (JST) JPMJFS2140MEXT | Japan Society for the Promotion of Science (JSPS) JP20H03216MEXT | Japan Society for the Promotion of Science (JSPS) JP21H02417MEXT | Japan Society for the Promotion of Science (JSPS) JP23H02439MEXT | Japan Society for the Promotion of Science (JSPS) JP23H04958NHLBI NIH HHS R01 HL087216U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01HL087216
6 · The paper itself

Abstract

The principal effect controlling the oxygen affinity of vertebrate haemoglobins (Hbs) is the allosteric switch between R and T forms with relatively high and low oxygen affinity respectively. Uniquely among jawed vertebrates, crocodilians possess Hb that shows a profound drop in oxygen affinity in the presence of bicarbonate ions. This allows them to stay underwater for extended periods by consuming almost all the oxygen present in the blood-stream, as metabolism releases carbon dioxide, whose conversion to bicarbonate and hydrogen ions is catalysed by carbonic anhydrase. Despite the apparent universal utility of bicarbonate as an allosteric regulator of Hb, this property evolved only in crocodilians. We report here the molecular structures of both human and a crocodilian Hb in the deoxy and liganded states, solved by cryo-electron microscopy. We reveal the precise interactions between two bicarbonate ions and the crocodilian protein at symmetry-related sites found only in the T state. No other known effector of vertebrate Hbs binds anywhere near these sites.

Indexed as

Alligators and CrocodilesBicarbonatesCryoelectron MicroscopyHemoglobinsAllosteric RegulationAnimalsHumansModels, MolecularOxygenProtein ConformationBicarbonatesHemoglobinsOxygen

Identifiers

PMID39090102
PMCPMC11294572

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.