Evidence map›Paper›PMID 39088332›Full record

ArticleBiochemistry2024

Conformation-Dependent Hydrogen-Bonding Interactions in a Switchable Artificial Metalloprotein.

Saman Fatima, Behzad Mehrafrooz, David G Boggs, Noor Ali, Swapnil Singh, Megan C Thielges, Jennifer Bridwell-Rabb, Aleksei Aksimentiev, Lisa Olshansky

Abstract read
In one paragraph

Article in Biochemistry, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Saman FatimaDepartment of Chemistry, Center for Biophysics and Quantitative Biology, Materials Research Laboratory, and the Beckman Institute for Advanced Science and Technology, University of Illinois Urbana-Champaign, 600 S. Mathews Ave., Urbana, Illinois 61801, United States.ORCID 0000-0003-1672-9835
Behzad MehrafroozBeckman Institute for Advanced Science and Technology, Center for Biophysics and Quantitative Biology, and Department of Physics, University of Illinois Urbana-Champaign, Urbana, Illinois 61801, United States.ORCID 0000-0002-3788-8918
David G BoggsDepartment of Chemistry, University of Michigan, 930 N. University Ave., Ann Arbor, Michigan 48109, United States.ORCID 0000-0003-2946-9307
Noor AliDepartment of Chemistry, Indiana University, 800 E. Kirkwood Ave., Bloomington, Indiana 47405, United States.ORCID 0000-0002-8956-064X
Swapnil SinghDepartment of Chemistry, Indiana University, 800 E. Kirkwood Ave., Bloomington, Indiana 47405, United States.
Megan C ThielgesDepartment of Chemistry, Indiana University, 800 E. Kirkwood Ave., Bloomington, Indiana 47405, United States.ORCID 0000-0002-4520-6673
Jennifer Bridwell-RabbDepartment of Chemistry, University of Michigan, 930 N. University Ave., Ann Arbor, Michigan 48109, United States.ORCID 0000-0002-7437-6217
Aleksei AksimentievBeckman Institute for Advanced Science and Technology, Center for Biophysics and Quantitative Biology, and Department of Physics, University of Illinois Urbana-Champaign, Urbana, Illinois 61801, United States.ORCID 0000-0002-6042-8442
Lisa OlshanskyDepartment of Chemistry, Center for Biophysics and Quantitative Biology, Materials Research Laboratory, and the Beckman Institute for Advanced Science and Technology, University of Illinois Urbana-Champaign, 600 S. Mathews Ave., Urbana, Illinois 61801, United States.ORCID 0000-0003-1076-9318

Funding

Resource for Macromolecular Modeling and VisualizationR24GM145965 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI Emad Tajkhorshid · 2022 to 2026
$6.2M
Paragons of Conformational Control in Metalloenzyme ReactivityR35GM138138 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI OLSHANSKY, LISA · 2020 to 2024
$1.9M
NIGMS NIH HHS R24 GM145965NIGMS NIH HHS R35 GM138138
6 · The paper itself

Abstract

Hydrogen-bonding (H-bonding) interactions in metalloprotein active sites can critically regulate enzyme function. Changes in the protein structure triggered by interplay with substrates, products, and partner proteins are often translated to the metallocofactor by way of specific changes in H-bond networks connected to the active site. However, the complexities of metalloprotein architecture and mechanism often preclude our ability to define the precise molecular interactions giving rise to these intricate regulatory pathways. To address this shortcoming, we have developed conformationally switchable artificial metalloproteins (swArMs) in which allosteric Gln-binding triggers protein conformational changes that impact the microenvironment surrounding an installed metallocofactor. Herein, we report a combined structural, spectroscopic, and computational approach to enhance the conformation-dependent changes in H-bond interactions surrounding the metallocofactor site of a swArM. Structure-informed molecular dynamics simulations were employed to predict point mutations that could enhance active site H-bond interactions preferentially in the Gln-bound

Indexed as

Hydrogen BondingMetalloproteinsMolecular Dynamics SimulationProtein ConformationCatalytic DomainMetalloproteins

Identifiers

PMID39088332
PMCPMC11699564

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.