Evidence map›Paper›PMID 39087523›Full record

ArticleNucleic acids research2024

Loss of the DNA repair protein, polynucleotide kinase/phosphatase, activates the type 1 interferon response independent of ionizing radiation.

Wisdom Deebeke Kate, Mesfin Fanta, Michael Weinfeld

Abstract read
In one paragraph

Article in Nucleic acids research, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Deficiency ofZoological research · 2026
    Article
  4. Review
  5. Article
  6. Review
  7. Article
  8. Mitochondrial metabolism and cancer therapeutic innovation.Signal transduction and targeted therapy · 2025
    Review
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Wisdom Deebeke KateDepartment of Oncology, University of Alberta, Edmonton, Alberta T6G 2R3, Canada.ORCID 0000-0003-3529-9383
Mesfin FantaDepartment of Oncology, University of Alberta, Edmonton, Alberta T6G 2R3, Canada.
Michael WeinfeldDepartment of Oncology, University of Alberta, Edmonton, Alberta T6G 2R3, Canada.ORCID 0000-0002-8773-1425

Funding

Alberta Cancer FoundationCancer Research Institute CRI3714CIHR PJT168869Terry Fox Foundation - Strategic Training in Transdisciplinary Radiation Science for the 21st Century STARS21University of Alberta
6 · The paper itself

Abstract

DNA damage has been implicated in the stimulation of the type 1 interferon (T1IFN) response. Here, we show that downregulation of the DNA repair protein, polynucleotide kinase/phosphatase (PNKP), in a variety of cell lines causes robust phosphorylation of STAT1, upregulation of interferon-stimulated genes and persistent accumulation of cytosolic DNA, all of which are indicators for the activation of the T1IFN response. Furthermore, this did not require damage induction by ionizing radiation. Instead, our data revealed that production of reactive oxygen species (ROS) synergises with PNKP loss to potentiate the T1IFN response, and that loss of PNKP significantly compromises mitochondrial DNA (mtDNA) integrity. Depletion of mtDNA or treatment of PNKP-depleted cells with ROS scavengers abrogated the T1IFN response, implicating mtDNA as a significant source of the cytosolic DNA required to potentiate the T1IFN response. The STING signalling pathway is responsible for the observed increase in the pro-inflammatory gene signature in PNKP-depleted cells. While the response was dependent on ZBP1, cGAS only contributed to the response in some cell lines. Our data have implications for cancer therapy, since PNKP inhibitors would have the potential to stimulate the immune response, and also to the neurological disorders associated with PNKP mutation.

Indexed as

DNA, MitochondrialDNA Repair EnzymesInterferon Type IPhosphotransferases (Alcohol Group Acceptor)Radiation, IonizingReactive Oxygen SpeciesCell LineCell Line, TumorCyclic Guanosine Monophosphate-Adenosine Monophosphate SynthaseCytosolDNA DamageDNA RepairHumansMembrane ProteinsNucleotidyltransferasesPhosphorylationcGAS protein, humanCyclic Guanosine Monophosphate-Adenosine Monophosphate SynthaseDNA, MitochondrialDNA Repair EnzymesInterferon Type IMembrane ProteinsNucleotidyltransferasesPhosphotransferases (Alcohol Group Acceptor)PNKP protein, humanReactive Oxygen SpeciesRNA-Binding ProteinsSTAT1 protein, humanSTAT1 Transcription FactorSTING1 protein, humanSTING Protein

Identifiers

PMID39087523
PMCPMC11381348

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.