Evidence map›Paper›PMID 39086770›Full record

ArticleNature cardiovascular research2022

Single-cell and spatial transcriptomics of the infarcted heart define the dynamic onset of the border zone in response to mechanical destabilization.

D M Calcagno, N Taghdiri, V K Ninh, J M Mesfin, A Toomu, R Sehgal, J Lee, Y Liang, J M Duran, E Adler and 5 more

Abstract read
In one paragraph

Article in Nature cardiovascular research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

D M CalcagnoDepartment of Bioengineering, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA.ORCID 0000-0001-7022-9220
N TaghdiriDepartment of Bioengineering, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA.
V K NinhDivision of Cardiology and Cardiovascular Institute, Department of Medicine, University of California San Diego, La Jolla, CA, USA.ORCID 0000-0001-6017-4035
J M MesfinDepartment of Bioengineering, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA.
A ToomuDepartment of Bioengineering, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA.
R SehgalDepartment of Bioengineering, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA.ORCID 0000-0002-3609-7452
J LeeDepartment of Bioengineering, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA.
Y LiangDivision of Cardiology and Cardiovascular Institute, Department of Medicine, University of California San Diego, La Jolla, CA, USA.
J M DuranDivision of Cardiology and Cardiovascular Institute, Department of Medicine, University of California San Diego, La Jolla, CA, USA.
E AdlerDivision of Cardiology and Cardiovascular Institute, Department of Medicine, University of California San Diego, La Jolla, CA, USA.
K L ChristmanDepartment of Bioengineering, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA.
K ZhangDepartment of Bioengineering, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA.
F SheikhDivision of Cardiology and Cardiovascular Institute, Department of Medicine, University of California San Diego, La Jolla, CA, USA.
Z FuDepartment of Bioengineering, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA.
K R KingDepartment of Bioengineering, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA.ORCID 0000-0003-1472-2189

Funding

UC San Diego Clinical and Translational Research InstituteUL1TR001442 · NCATS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI FIRESTEIN, GARY S, HOGARTH, MICHAEL · 2015 to 2024
$88.3M
Training In Cardiovascular Physiology & PharmacologyT32HL007444 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Ju Chen, Robert Scott Ross · 1985 to 2026
$11.1M
Integrative Bioengineering of Heart, Vessels, and BloodT32HL105373 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI CHIEN, SHU, INTAGLIETTA, MARCOS · 2010 to 2019
$3.6M
Elucidating Cell Communication Networks during Tissue Inflammation, Fibrosis, and RegenerationDP2AR075321 · NIAMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KING, KEVIN R · 2018 to 2018
$2.4M
Uncovering Molecular Targets for Arrhythmogenic Cardiomyopathy TherapeuticsR01HL162369 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SHEIKH, FARAH · 2022 to 2025
$2.0M
Uncovering New Functions of CSN6 in Cardiac Desmosomal Biology and DiseaseR01HL142251 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SHEIKH, FARAH · 2018 to 2021
$1.6M
Danger Signaling and Spread of Injury after Myocardial InfarctionR00HL129168 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KING, KEVIN R · 2017 to 2019
$746k
Illumina NovaSeq 6000 Sequencing SystemS10OD026929 · OD · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI JEPSEN, KRISTEN LYNN · 2019 to 2019
$600k
NCATS NIH HHS UL1 TR001442NHLBI NIH HHS R00 HL129168NHLBI NIH HHS R01 HL142251NHLBI NIH HHS R01 HL162369NHLBI NIH HHS T32 HL007444NHLBI NIH HHS T32 HL105373NIAMS NIH HHS DP2 AR075321NIH HHS S10 OD026929
6 · The paper itself

Abstract

The border zone (BZ) of the infarcted heart is a geographically complex and biologically enigmatic interface separating poorly perfused infarct zones (IZs) from remote zones (RZs). The cellular and molecular mechanisms of myocardial BZs are not well understood because microdissection inevitably combines them with uncontrolled amounts of RZs and IZs. Here, we use single-cell/nucleus RNA sequencing, spatial transcriptomics and multiplexed RNA fluorescence in situ hybridization to redefine the BZ based on cardiomyocyte transcriptomes. BZ1 (

Identifiers

PMID39086770
PMCPMC11290420

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.