Evidence map›Paper›PMID 39085652›Full record

ArticleMicrobial ecology2024

Discovery of Vibrio cholerae in Urban Sewage in Copenhagen, Denmark.

Christian Brinch, Saria Otani, Patrick Munk, Maaike van den Beld, Eelco Franz, Frank M Aarestrup

Abstract read
In one paragraph

Article in Microbial ecology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Christian BrinchResearch Group for Genomic Epidemiology, Technical University of Denmark, Kgs, Lyngby, Denmark. cbri@food.dtu.dk.ORCID http://orcid.org/0000-0002-5074-7183
Saria OtaniResearch Group for Genomic Epidemiology, Technical University of Denmark, Kgs, Lyngby, Denmark.ORCID http://orcid.org/0000-0002-2538-8086
Patrick MunkResearch Group for Genomic Epidemiology, Technical University of Denmark, Kgs, Lyngby, Denmark.ORCID http://orcid.org/0000-0001-8813-4019
Maaike van den BeldCentre for Infectious Disease Control, National Institute for Public Health and the Environment, Bilthoven, The Netherlands.
Eelco FranzCentre for Infectious Disease Control, National Institute for Public Health and the Environment, Bilthoven, The Netherlands.
Frank M AarestrupResearch Group for Genomic Epidemiology, Technical University of Denmark, Kgs, Lyngby, Denmark.

Funding

Horizon 2020 Framework Programme VEO 874735Novo Nordisk Fonden NNF16OC0021856
6 · The paper itself

Abstract

We report the discovery of a persistent presence of Vibrio cholerae at very low abundance in the inlet of a single wastewater treatment plant in Copenhagen, Denmark at least since 2015. Remarkably, no environmental or locally transmitted clinical case of V. cholerae has been reported in Denmark for more than 100 years. We, however, have recovered a near-complete genome out of 115 metagenomic sewage samples taken over the past 8 years, despite the extremely low relative abundance of one V. cholerae read out of 500,000 sequenced reads. Due to the very low relative abundance, routine screening of the individual samples did not reveal V. cholerae. The recovered genome lacks the gene responsible for cholerae toxin production, but although this strain may not pose an immediate public health risk, our finding illustrates the importance, challenges, and effectiveness of wastewater-based pathogen surveillance.

Indexed as

SewageVibrio choleraeCholeraDenmarkGenome, BacterialWastewaterSewageWastewaterMetagenomic genome recoveryPathogen detectionSewage surveillanceVibrio cholerae

Identifiers

PMID39085652
PMCPMC11291605

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.