Evidence map›Paper›PMID 39085648›Full record

ArticleThe EMBO journal2024

Loss of Elp3 blocks intestinal tuft cell differentiation via an mTORC1-Atf4 axis.

Caroline Wathieu, Arnaud Lavergne, Xinyi Xu, Marion Rolot, Ivan Nemazanyy, Kateryna Shostak, Najla El Hachem, Chloé Maurizy, Charlotte Leemans, Pierre Close and 5 more

Abstract read
In one paragraph

Article in The EMBO journal, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Caroline WathieuInterdisciplinary Cluster for Applied Genoproteomics, Liege, Belgium.ORCID http://orcid.org/0000-0003-1874-3657
Arnaud LavergneGIGA Genomics Platform, University of Liege, Liege, Belgium.ORCID http://orcid.org/0000-0003-4817-3202
Xinyi XuInterdisciplinary Cluster for Applied Genoproteomics, Liege, Belgium.
Marion RolotLaboratory of Immunology-Vaccinology, Fundamental and Applied Research in Animals and Health (FARAH), University of Liege, Liege, Belgium.
Ivan NemazanyyPlatform for Metabolic Analyses, Structure Fédérative de Recherche Necker, INSERM US24/CNRS UMS 3633, Paris, France.ORCID http://orcid.org/0000-0001-8080-839X
Kateryna ShostakInterdisciplinary Cluster for Applied Genoproteomics, Liege, Belgium.
Najla El HachemInterdisciplinary Cluster for Applied Genoproteomics, Liege, Belgium.ORCID http://orcid.org/0000-0002-4180-3016
Chloé MaurizyInterdisciplinary Cluster for Applied Genoproteomics, Liege, Belgium.ORCID http://orcid.org/0000-0002-5176-7514
Charlotte LeemansInterdisciplinary Cluster for Applied Genoproteomics, Liege, Belgium.
Pierre CloseInterdisciplinary Cluster for Applied Genoproteomics, Liege, Belgium.
Laurent NguyenInterdisciplinary Cluster for Applied Genoproteomics, Liege, Belgium.ORCID http://orcid.org/0000-0002-8560-3008
Christophe DesmetInterdisciplinary Cluster for Applied Genoproteomics, Liege, Belgium.
Sylvia Tielens *Interdisciplinary Cluster for Applied Genoproteomics, Liege, Belgium.
Benjamin G Dewals *Laboratory of Immunology-Vaccinology, Fundamental and Applied Research in Animals and Health (FARAH), University of Liege, Liege, Belgium.ORCID http://orcid.org/0000-0003-1497-0799
Alain Chariot *Interdisciplinary Cluster for Applied Genoproteomics, Liege, Belgium. Alain.chariot@uliege.be.ORCID http://orcid.org/0000-0002-1691-4347

Funding

Belgian Foundation against cancer F/2020/1323Walloon excellence in life sciences and biotechnology (WELBIO) WELBIO-CR-2019-02R
6 · The paper itself

Abstract

Intestinal tuft cells are critical for anti-helminth parasite immunity because they produce IL-25, which triggers IL-13 secretion by activated group 2 innate lymphoid cells (ILC2s) to expand both goblet and tuft cells. We show that epithelial Elp3, a tRNA-modifying enzyme, promotes tuft cell differentiation and is consequently critical for IL-25 production, ILC2 activation, goblet cell expansion and control of Nippostrongylus brasiliensis helminth infection in mice. Elp3 is essential for the generation of intestinal immature tuft cells and for the IL-13-dependent induction of glycolytic enzymes such as Hexokinase 1 and Aldolase A. Importantly, loss of epithelial Elp3 in the intestine blocks the codon-dependent translation of the Gator1 subunit Nprl2, an mTORC1 inhibitor, which consequently enhances mTORC1 activation and stabilizes Atf4 in progenitor cells. Likewise, Atf4 overexpression in mouse intestinal epithelium blocks tuft cell differentiation in response to intestinal helminth infection. Collectively, our data define Atf4 as a negative regulator of tuft cells and provide insights into promotion of intestinal type 2 immune response to parasites through tRNA modifications.

Indexed as

Activating Transcription Factor 4Cell DifferentiationIntestinal MucosaMechanistic Target of Rapamycin Complex 1AnimalsGoblet CellsInterleukin-13MiceMice, Inbred C57BLMice, KnockoutNippostrongylusActivating Transcription Factor 4Atf4 protein, mouseInterleukin-13Mechanistic Target of Rapamycin Complex 1ATF4mTORC1tRNA ModificationsTuft Cells

Identifiers

PMID39085648
PMCPMC11405396

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.