Evidence map›Paper›PMID 39085542›Full record

ReviewNature2024

Sophisticated natural products as antibiotics.

Kim Lewis, Richard E Lee, Heike Brötz-Oesterhelt, Sebastian Hiller, Marina V Rodnina, Tanja Schneider, Markus Weingarth, Ingo Wohlgemuth

Abstract readReview
In one paragraph

Review in Nature, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 68 papers.

0numbers the graph read from it
0cells of the map it votes in
68citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

68 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. ROS-Balancing MXene/MoSeSmall (Weinheim an der Bergstrasse, Germany) · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Molecular action of NZ2114, a superior plectasin derivative.npj antimicrobials and resistance · 2026
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

8 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Kim LewisAntimicrobial Discovery Center, Northeastern University, Boston, MA, USA. k.lewis@northeastern.edu.ORCID 0000-0002-1621-7664
Richard E LeeDepartment of Chemical Biology and Therapeutics, St Jude Children's Research Hospital, Memphis, TN, USA. richard.lee@stjude.org.ORCID 0000-0002-2397-0443
Heike Brötz-OesterheltInterfaculty Institute of Microbiology and Infection Medicine, Tubingen, Germany.ORCID 0000-0001-9364-1832
Sebastian HillerBiozentrum, University of Basel, Basel, Switzerland.ORCID 0000-0002-6709-4684
Marina V RodninaMax Planck Institute for Multidisciplinary Sciences, Goettingen, Germany.
Tanja SchneiderInstitute for Pharmaceutical Microbiology, University of Bonn, University Hospital Bonn, Bonn, Germany.ORCID 0000-0001-7269-4716
Markus WeingarthChemistry Department, Utrecht University, Utrecht, the Netherlands.ORCID 0000-0003-0831-8673
Ingo WohlgemuthMax Planck Institute for Multidisciplinary Sciences, Goettingen, Germany.

Funding

Development of Novel Proteins Synthesis Inhibitors for MDR TuberculosisR01AI090810 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI LEE, RICHARD E. · 2010 to 2022
$8.9M
Development of ureadepsipetides for drug-resistant infectionsR01AI141193 · NIAID · ARIETIS · PI LAFLEUR, MICHAEL, LEE, RICHARD E. · 2019 to 2023
$6.4M
Discovering antimicrobials acting against MDR pathogensR01AI170962 · NIAID · NORTHEASTERN UNIVERSITY · PI LEWIS, KIM · 2022 to 2025
$4.5M
Spectinomycin analogs for NTM infectionsR01AI157312 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI LEE, RICHARD E. · 2020 to 2024
$4.1M
Targeting NuoD for the treatment of H. pyloriR01AI170765 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Michael LaFleur, Richard E. Lee · 2023 to 2026
$3.4M
Hybrid Antibiotics for Persistent InfectionsR01AI180231 · NIAID · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI Michael LaFleur, Richard E. Lee · 2023 to 2026
$3.4M
Evaluating darobactins as antimicrobial agentsR01AI158388 · NIAID · NORTHEASTERN UNIVERSITY · PI LEWIS, KIM · 2021 to 2025
$3.0M
NIAID NIH HHS R01 AI090810NIAID NIH HHS R01 AI141193NIAID NIH HHS R01 AI157312NIAID NIH HHS R01 AI158388NIAID NIH HHS R01 AI170765NIAID NIH HHS R01 AI170962NIAID NIH HHS R01 AI180231
6 · The paper itself

Abstract

In this Review, we explore natural product antibiotics that do more than simply inhibit an active site of an essential enzyme. We review these compounds to provide inspiration for the design of much-needed new antibacterial agents, and examine the complex mechanisms that have evolved to effectively target bacteria, including covalent binders, inhibitors of resistance, compounds that utilize self-promoted entry, those that evade resistance, prodrugs, target corrupters, inhibitors of 'undruggable' targets, compounds that form supramolecular complexes, and selective membrane-acting agents. These are exemplified by β-lactams that bind covalently to inhibit transpeptidases and β-lactamases, siderophore chimeras that hijack import mechanisms to smuggle antibiotics into the cell, compounds that are activated by bacterial enzymes to produce reactive molecules, and antibiotics such as aminoglycosides that corrupt, rather than merely inhibit, their targets. Some of these mechanisms are highly sophisticated, such as the preformed β-strands of darobactins that target the undruggable β-barrel chaperone BamA, or teixobactin, which binds to a precursor of peptidoglycan and then forms a supramolecular structure that damages the membrane, impeding the emergence of resistance. Many of the compounds exhibit more than one notable feature, such as resistance evasion and target corruption. Understanding the surprising complexity of the best antimicrobial compounds provides a roadmap for developing novel compounds to address the antimicrobial resistance crisis by mining for new natural products and inspiring us to design similarly sophisticated antibiotics.

Indexed as

Anti-Bacterial AgentsBacteriaBiological ProductsAminoglycosidesAnimalsbeta Lactam Antibioticsbeta-Lactamase InhibitorsDrug DesignDrug Resistance, BacterialHumansPeptidyl TransferasesPhenylpropionatesProdrugsSiderophoresAminoglycosidesAnti-Bacterial Agentsbeta Lactam Antibioticsbeta-Lactamase InhibitorsBiological ProductsdarobactinPeptidyl TransferasesPhenylpropionatesProdrugsSiderophores

Identifiers

PMID39085542
PMCPMC11573432

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.