Evidence map›Paper›PMID 39085212›Full record

ArticleNature communications2024

Asgard archaea defense systems and their roles in the origin of eukaryotic immunity.

Pedro Leão, Mary E Little, Kathryn E Appler, Daphne Sahaya, Emily Aguilar-Pine, Kathryn Currie, Ilya J Finkelstein, Valerie De Anda, Brett J Baker

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. The archaeal roots of eukaryotic life.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Pedro LeãoDepartment of Integrative Biology, University of Texas at Austin, Austin, TX, USA. pedro.leao@ru.nl.ORCID 0000-0001-5386-7626
Mary E LittleDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX, USA.
Kathryn E ApplerDepartment of Marine Science, Marine Science Institute, University of Texas at Austin, Port Aransas, TX, USA.ORCID 0000-0002-1219-1786
Daphne SahayaDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX, USA.
Emily Aguilar-PineDepartment of Integrative Biology, University of Texas at Austin, Austin, TX, USA.
Kathryn CurrieDepartment of Integrative Biology, University of Texas at Austin, Austin, TX, USA.
Ilya J FinkelsteinDepartment of Molecular Biosciences, University of Texas at Austin, Austin, TX, USA.ORCID 0000-0002-9371-2431
Valerie De AndaDepartment of Integrative Biology, University of Texas at Austin, Austin, TX, USA.
Brett J BakerDepartment of Integrative Biology, University of Texas at Austin, Austin, TX, USA. acidophile@gmail.com.ORCID 0000-0002-5971-1021

Funding

Simons Foundation 73592LPIWelch Foundation F-1808
6 · The paper itself

Abstract

Dozens of new antiviral systems have been recently characterized in bacteria. Some of these systems are present in eukaryotes and appear to have originated in prokaryotes, but little is known about these defense mechanisms in archaea. Here, we explore the diversity and distribution of defense systems in archaea and identify 2610 complete systems in Asgardarchaeota, a group of archaea related to eukaryotes. The Asgard defense systems comprise 89 unique systems, including argonaute, NLR, Mokosh, viperin, Lassamu, and CBASS. Asgard viperin and argonaute proteins have structural homology to eukaryotic proteins, and phylogenetic analyses suggest that eukaryotic viperin proteins were derived from Asgard viperins. We show that Asgard viperins display anti-phage activity when heterologously expressed in bacteria. Eukaryotic and bacterial argonaute proteins appear to have originated in Asgardarchaeota, and Asgard argonaute proteins have argonaute-PIWI domains, key components of eukaryotic RNA interference systems. Our results support that Asgardarchaeota played important roles in the origin of antiviral defense systems in eukaryotes.

Indexed as

ArchaeaArchaeal ProteinsPhylogenyArgonaute ProteinsBacteriophagesEukaryotaEvolution, MolecularArchaeal ProteinsArgonaute Proteins

Identifiers

PMID39085212
PMCPMC11291487

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.