Evidence map›Paper›PMID 39084267›Full record

ArticleGastroenterology2024

Mucosal Single-Cell Profiling of Crohn's-Like Disease of the Pouch Reveals Unique Pathogenesis and Therapeutic Targets.

Siyan Cao, Khai M Nguyen, Kaiming Ma, Xiaotang Du, Xiuli Liu, Alina Ulezko Antonova, Richard P Rood, Anas Gremida, Chien-Huan Chen, Alexandra Gutierrez and 12 more

Abstract read
In one paragraph

Article in Gastroenterology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Article
  3. The roles and heterogeneity of CD8International journal of molecular medicine · 2026
    Review
  4. Article
  5. Pleiotropic Mucosal Innate Immune Memory in the Gastrointestinal Tract.International journal of molecular sciences · 2025
    Review
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Siyan CaoDivision of Gastroenterology, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, Missouri. Electronic address: caos@wustl.edu.
Khai M NguyenDepartment of Pathology and Immunology, Washington University in St. Louis School of Medicine, St. Louis, Missouri.
Kaiming MaDivision of Gastroenterology, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, Missouri.
Xiaotang DuDepartment of Pathology and Immunology, Washington University in St. Louis School of Medicine, St. Louis, Missouri.
Xiuli LiuDepartment of Pathology and Immunology, Washington University in St. Louis School of Medicine, St. Louis, Missouri.
Alina Ulezko AntonovaDepartment of Pathology and Immunology, Washington University in St. Louis School of Medicine, St. Louis, Missouri.
Richard P RoodDivision of Gastroenterology, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, Missouri.
Anas GremidaDivision of Gastroenterology, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, Missouri.
Chien-Huan ChenDivision of Gastroenterology, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, Missouri.
Alexandra GutierrezDivision of Gastroenterology, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, Missouri.
Deborah C RubinDivision of Gastroenterology, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, Missouri.
Martin H GregoryDivision of Gastroenterology, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, Missouri.
Mate GergelyDivision of Gastroenterology, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, Missouri.
Guadalupe Oliva EscuderoDivision of Gastroenterology, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, Missouri.
Katherine HuangDivision of Gastroenterology, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, Missouri.
Natalia JaegerDepartment of Pathology and Immunology, Washington University in St. Louis School of Medicine, St. Louis, Missouri.
Marina CellaDepartment of Pathology and Immunology, Washington University in St. Louis School of Medicine, St. Louis, Missouri.
Rodney D NewberryDivision of Gastroenterology, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, Missouri.
Nicholas O DavidsonDivision of Gastroenterology, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, Missouri.
Matthew A CiorbaDivision of Gastroenterology, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, Missouri.
Parakkal DeepakDivision of Gastroenterology, Department of Medicine, Washington University in St. Louis School of Medicine, St. Louis, Missouri.
Marco ColonnaDepartment of Pathology and Immunology, Washington University in St. Louis School of Medicine, St. Louis, Missouri. Electronic address: mcolonna@wustl.edu.

Funding

Washington University DDRCC Supplemental Equipment RequestP30DK052574 · NIDDK · WASHINGTON UNIVERSITY · PI Nicholas O. Davidson · 2000 to 2026
$30.8M
CLINICAL/LABORATORY TRAINING ACADEMIC GASTROENTEROLOGYT32DK007130 · NIDDK · WASHINGTON UNIVERSITY · PI MATTHEW AARON CIORBA · 1986 to 2026
$8.3M
Mucosal Immune Defense Mechanisms of the Urinary BladderR01DK132327 · NIDDK · WASHINGTON UNIVERSITY · PI MARCO COLONNA, SCOTT J. HULTGREN · 2023 to 2026
$2.5M
MICROBIOTA-DEPENDENT CONTROL OF CLOSTRIDIUM DIFFICILE: THE ROLE OF ACETATE AND IL-22 BINDING PROTEINR01DK126969 · NIDDK · WASHINGTON UNIVERSITY · PI COLONNA, MARCO · 2021 to 2024
$1.6M
Endoplasmic Reticulum Stress Controls Innate Lymphoid Cells in Intestinal InflammationK08DK140612 · NIDDK · WASHINGTON UNIVERSITY · PI Siyan Cao · 2024 to 2026
$501k
NIDDK NIH HHS K08 DK140612NIDDK NIH HHS P30 DK052574NIDDK NIH HHS R01 DK126969NIDDK NIH HHS R01 DK132327NIDDK NIH HHS T32 DK007130
6 · The paper itself

Abstract

BACKGROUND &

aimsThe pathophysiology of Crohn's-like disease of the pouch (CDP) in patients with a history of ulcerative colitis (UC) is unknown. We examined mucosal cells from patients with and without CDP using single-cell analyses.

methodsEndoscopic samples were collected from pouch body and prepouch ileum (pouch/ileum) of 50 patients with an ileal pouch-anal anastomosis. Single-cell RNA sequencing was performed on pouch/ileal tissues of patients with normal pouch/ileum and CDP. Mass cytometry was performed on mucosal immune cells from patients with UC with normal pouch/ileum, CDP, pouchitis, and those with familial adenomatous polyposis after pouch formation. Findings were independently validated using immunohistochemistry.

resultsThe cell populations/states in the pouch body differed from those in the prepouch ileum, likely secondary to increased microbial burden. Compared with the familial adenomatous polyposis pouch, the UC pouch was enriched in colitogenic immune cells even without inflammation. CDP was characterized by increases in T helper 17 cells, inflammatory fibroblasts, inflammatory monocytes, TREM1

conclusionsCDP likely represents a distinct entity of inflammatory bowel disease with heightened endoplasmic reticulum stress in both immune and nonimmune cells, which may become a novel diagnostic biomarker and therapeutic target for CDP.

Indexed as

Colitis, UlcerativeCrohn DiseaseIntestinal MucosaPouchitisSingle-Cell AnalysisAdenomatous Polyposis ColiAdultColonic PouchesFemaleHumansIleumMaleMiddle AgedProctocolectomy, RestorativeRNA-SeqTh17 CellsCyTOFIBDIPAAPouchscRNA-seq

Identifiers

PMID39084267
PMCPMC11973979

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.