Evidence map›Paper›PMID 39083602›Full record

ArticleScience advances2024

Immediate myeloid depot for SARS-CoV-2 in the human lung.

Mélia Magnen, Ran You, Arjun A Rao, Ryan T Davis, Lauren Rodriguez, Olivier Bernard, Camille R Simoneau, Lisiena Hysenaj, Kenneth H Hu, Mazharul Maishan and 16 more

Abstract read
In one paragraph

Article in Science advances, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. A survey of SARS-CoV-2 tropism.Infectious diseases & immunity · 2025
    Review
  10. Article
  11. Article
  12. Article
  13. Spike-specific T-cell responses in patients with COVID-19 successfully treated with neutralizing monoclonal antibodies against SARS-CoV-2.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2022
    Article
  14. Insights from Transcriptomics: CD163American journal of respiratory cell and molecular biology · 2022
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

26 authors.

Mélia MagnenDepartment of Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0001-5189-0072
Ran YouDepartment of Pathology, University of California, San Francisco, San Francisco, CA 94143, USA.
Arjun A RaoDepartment of Pathology, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0003-4480-3190
Ryan T DavisDepartment of Pathology, University of California, San Francisco, San Francisco, CA 94143, USA.
Lauren RodriguezCoLabs Initiative, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0009-0009-9124-4652
Olivier BernardDepartment of Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0003-4468-6254
Camille R SimoneauDepartment of Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0001-9222-8130
Lisiena HysenajDepartment of Anatomy, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0001-8056-5375
Kenneth H HuDepartment of Pathology, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0002-0294-0202
Mazharul MaishanDepartment of Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0002-6374-7211
Catharina ConradDepartment of Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0002-7160-9169
Oghenekevwe M GbenedioDepartment of Anatomy, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0002-5489-0067
Bushra SamadCoLabs Initiative, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0002-2893-0897
The Ucsf Comet ConsortiumAll UCSF COMET Consortium collaborators are affiliated with the University of California, San Francisco, San Francisco, CA 94143, USA.
Christina LoveDepartment of Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.
Prescott G WoodruffDepartment of Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0003-3176-0603
David J ErleDepartment of Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0002-2171-0648
Carolyn M HendricksonDepartment of Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0003-4662-2385
Carolyn S CalfeeDepartment of Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.
Michael A MatthayDepartment of Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0003-3039-8155
Jeroen P RooseDepartment of Anatomy, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0003-4746-2811
Anita SilDepartment of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0002-3987-7534
Melanie OttDepartment of Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0002-5697-1274
Charles R LangelierDepartment of Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0002-6708-4646
Matthew F KrummelDepartment of Pathology, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0001-7915-3533
Mark R LooneyDepartment of Medicine, University of California, San Francisco, San Francisco, CA 94143, USA.ORCID 0000-0003-0241-9190

Funding

Understanding Asthma EndotypesU19AI077439 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI David J Erle · 2008 to 2026
$41.1M
Understand the metabolic fitness of naïve T cellsP01AI091580 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JEROEN ROOSE · 2011 to 2026
$31.1M
Research BaseP30DK063720 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GERMAN, MICHAEL S · 2003 to 2019
$21.8M
Spatiotemporal Control of T cell Synapse Stabilization and SignalingR01AI052116 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI KRUMMEL, MATTHEW F · 2002 to 2022
$8.3M
Precision Medicine in the Acute Respiratory Distress SyndromeR35HL140026 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI CALFEE, CAROLYN · 2018 to 2024
$6.8M
Immunobiology of the normal and injured lungR35HL161241 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI MARK ROBERTS LOONEY · 2022 to 2026
$4.2M
Mechanisms and pathogenicity of SARS-CoV-2-induced neutrophil extracellular trapsR01AI160167 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LOONEY, MARK ROBERTS · 2021 to 2025
$3.1M
BD FACSAria Fusion Cell SorterS10OD021822 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LEE, MICHAEL R. · 2016 to 2016
$573k
NHLBI NIH HHS R35 HL140026NHLBI NIH HHS R35 HL161241NIAID NIH HHS P01 AI091580NIAID NIH HHS R01 AI052116NIAID NIH HHS R01 AI160167NIAID NIH HHS U19 AI077439NIDDK NIH HHS P30 DK063720NIH HHS S10 OD021822
6 · The paper itself

Abstract

In the pathogenesis of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection, epithelial populations in the distal lung expressing Angiotensin-converting enzyme 2 (ACE2) are infrequent, and therefore, the model of viral expansion and immune cell engagement remains incompletely understood. Using human lungs to investigate early host-viral pathogenesis, we found that SARS-CoV-2 had a rapid and specific tropism for myeloid populations. Human alveolar macrophages (AMs) reliably expressed ACE2 allowing both spike-ACE2-dependent viral entry and infection. In contrast to Influenza A virus, SARS-CoV-2 infection of AMs was productive, amplifying viral titers. While AMs generated new viruses, the interferon responses to SARS-CoV-2 were muted, hiding the viral dissemination from specific antiviral immune responses. The reliable and veiled viral depot in myeloid cells in the very early phases of SARS-CoV-2 infection of human lungs enables viral expansion in the distal lung and potentially licenses subsequent immune pathologies.

Indexed as

Angiotensin-Converting Enzyme 2COVID-19LungMacrophages, AlveolarMyeloid CellsSARS-CoV-2HumansSpike Glycoprotein, CoronavirusViral TropismVirus InternalizationACE2 protein, humanAngiotensin-Converting Enzyme 2Spike Glycoprotein, Coronavirusspike protein, SARS-CoV-2

Identifiers

PMID39083602
PMCPMC11290487

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.