Evidence map›Paper›PMID 39082505›Full record

ArticleMicrobiologyOpen2024

Reassessment of the genetic basis of natural rifampin resistance in the genus Rickettsia.

Julien Amoros, Noor Fattar, Marie Buysse, Meriem Louni, Joanne Bertaux, Didier Bouchon, Olivier Duron

Abstract read
In one paragraph

Article in MicrobiologyOpen, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Evolutionary Convergence of Nutritional Symbionts in Ticks.Environmental microbiology reports · 2025
    Article
  3. Review
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Julien AmorosMIVEGEC, CNRS, IRD, University of Montpellier, Montpellier, France.
Noor FattarMIVEGEC, CNRS, IRD, University of Montpellier, Montpellier, France.
Marie BuysseMIVEGEC, CNRS, IRD, University of Montpellier, Montpellier, France.
Meriem LouniEBI, CNRS, University of Poitiers, Poitiers, France.
Joanne BertauxEBI, CNRS, University of Poitiers, Poitiers, France.
Didier BouchonEBI, CNRS, University of Poitiers, Poitiers, France.
Olivier DuronMIVEGEC, CNRS, IRD, University of Montpellier, Montpellier, France.

Funding

Agence Nationale de la Recherche ANR-10-LABX-04-01Agence Nationale de la Recherche ANR-10-LABX-25-01Agence Nationale de la Recherche ANR-21-CE02-0002Région Occitanie Pyrénées-Méditerranée RIVOCUniversité de Montpellier KIM RIVEUniversité de Montpellier MUSEUniversité de Montpellier RIVOC
6 · The paper itself

Abstract

Rickettsia, a genus of obligate intracellular bacteria, includes species that cause significant human diseases. This study challenges previous claims that the Leucine-973 residue in the RNA polymerase beta subunit is the primary determinant of rifampin resistance in Rickettsia. We investigated a previously untested Rickettsia species, R. lusitaniae, from the Transitional group and found it susceptible to rifampin, despite possessing the Leu-973 residue. Interestingly, we observed the conservation of this residue in several rifampin-susceptible species across most Rickettsia phylogenetic groups. Comparative genomics revealed potential alternative resistance mechanisms, including additional amino acid variants that could hinder rifampin binding and genes that could facilitate rifampin detoxification through efflux pumps. Importantly, the evolutionary history of Rickettsia genomes indicates that the emergence of natural rifampin resistance is phylogenetically constrained within the genus, originating from ancient genetic features shared among a unique set of closely related Rickettsia species. Phylogenetic patterns appear to be the most reliable predictors of natural rifampin resistance, which is confined to a distinct monophyletic subclade known as Massiliae. The distinctive features of the RNA polymerase beta subunit in certain untested Rickettsia species suggest that R. raoultii, R. amblyommatis, R. gravesii, and R. kotlanii may also be naturally rifampin-resistant species.

Indexed as

DNA-Directed RNA PolymerasesDrug Resistance, BacterialPhylogenyRickettsiaRifampinAnti-Bacterial AgentsGenome, BacterialHumansMicrobial Sensitivity TestsAnti-Bacterial AgentsDNA-Directed RNA PolymerasesRifampinRNA polymerase beta subunitnatural antibiotic resistanceRickettsiarifampinRNA polymerase β subunitrpoB

Identifiers

PMID39082505
PMCPMC11289727

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.