Evidence map›Paper›PMID 39080253›Full record

ArticleNature communications2024

Modular RNA motifs for orthogonal phase separated compartments.

Jaimie Marie Stewart, Shiyi Li, Anli A Tang, Melissa Ann Klocke, Martin Vincent Gobry, Giacomo Fabrini, Lorenzo Di Michele, Paul W K Rothemund, Elisa Franco

Erratum issuedAbstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Review
  2. Article
  3. Combinatorial decision-making driven by multicomponent surface condensates.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  4. Article
  5. Article
  6. Article
  7. Phase Separation of Nucleic Acids: Mechanisms, Properties, and Applications.Angewandte Chemie (International ed. in English) · 2026
    Review
  8. Article
  9. Diverse, distinct, and densely packed DNA nanostar droplets.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  10. Article
  11. Article
  12. Article
  13. Programmable artificial RNA condensates in mammalian cells.bioRxiv : the preprint server for biology · 2026
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Internal Phase Separation in Synthetic DNA Condensates.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Jaimie Marie Stewart *Department of Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA.
Shiyi Li *Department of Bioengineering, University of California, Los Angeles, CA, USA.ORCID 0000-0002-7831-7900
Anli A Tang *Department of Mechanical and Aerospace Engineering, University of California, Los Angeles, CA, USA.ORCID 0009-0007-2831-9469
Melissa Ann KlockeDepartment of Mechanical and Aerospace Engineering, University of California, Los Angeles, CA, USA.
Martin Vincent GobryInterdisciplinary Nanoscience Center (iNANO), Aarhus University, Aarhus, Denmark.ORCID 0000-0003-0155-0787
Giacomo FabriniDepartment of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, UK.ORCID 0000-0001-8601-1680
Lorenzo Di MicheleDepartment of Chemical Engineering and Biotechnology, University of Cambridge, Cambridge, UK.ORCID 0000-0002-1458-9747
Paul W K RothemundDepartment of Computing and Mathematical Sciences, California Institute of Technology, Pasadena, CA, USA. pwkr@dna.caltech.edu.ORCID 0000-0002-1653-3202
Elisa FrancoDepartment of Bioengineering, University of California, Los Angeles, CA, USA. efranco@seas.ucla.edu.ORCID 0000-0003-1103-2668

Funding

EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) ERC-STG No 851667 - NANOCELLNational Science Foundation (NSF) 1938194Royal Society UF160152, URF\R\221009
6 · The paper itself

Abstract

Recent discoveries in biology have highlighted the importance of protein and RNA-based condensates as an alternative to classical membrane-bound organelles. Here, we demonstrate the design of pure RNA condensates from nanostructured, star-shaped RNA motifs. We generate condensates using two different RNA nanostar architectures: multi-stranded nanostars whose binding interactions are programmed via linear overhangs, and single-stranded nanostars whose interactions are programmed via kissing loops. Through systematic sequence design, we demonstrate that both architectures can produce orthogonal (distinct and immiscible) condensates, which can be individually tracked via fluorogenic aptamers. We also show that aptamers make it possible to recruit peptides and proteins to the condensates with high specificity. Successful co-transcriptional formation of condensates from single-stranded nanostars suggests that they may be genetically encoded and produced in living cells. We provide a library of orthogonal RNA condensates that can be modularly customized and offer a route toward creating systems of functional artificial organelles for the task of compartmentalizing molecules and biochemical reactions.

Indexed as

Aptamers, NucleotideNucleotide MotifsRNABiomolecular CondensatesNanostructuresNucleic Acid ConformationOrganellesAptamers, NucleotideRNA

Identifiers

PMID39080253
PMCPMC11289419

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.