Evidence map›Paper›PMID 39079981›Full record

ArticleCommunications biology2024

A MYCN-driven de-differentiation profile identifies a subgroup of aggressive retinoblastoma.

Tatsiana Ryl, Elena Afanasyeva, Till Hartmann, Melanie Schwermer, Markus Schneider, Christopher Schröder, Maren Wagemanns, Arthur Bister, Deniz Kanber, Laura Steenpass and 10 more

Erratum issuedAbstract read
In one paragraph

Article in Communications biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Trial
  2. Article
  3. Article
  4. Definition of parameters and thresholds to detect MYCN amplification in retinoblastomas.Virchows Archiv : an international journal of pathology · 2026
    Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. [Liquid biopsy in retinoblastomas].Die Ophthalmologie · 2024
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

20 authors.

Tatsiana Ryl *Department of Pediatric Hematology and Oncology, University Hospital Essen, Essen, Germany.
Elena Afanasyeva *Department of Pediatric Hematology and Oncology, University Hospital Essen, Essen, Germany.
Till HartmannAlgorithms for Reproducible Bioinformatics, Genome Informatics, Institute of Human Genetics, University Hospital Essen, University of Duisburg-Essen, Essen, Germany.ORCID 0000-0002-6993-347X
Melanie SchwermerDepartment of Pediatric Hematology and Oncology, University Hospital Essen, Essen, Germany.
Markus SchneiderDepartment of Pediatric Hematology and Oncology, University Hospital Essen, Essen, Germany.ORCID 0000-0001-6634-4306
Christopher SchröderAlgorithms for Reproducible Bioinformatics, Genome Informatics, Institute of Human Genetics, University Hospital Essen, University of Duisburg-Essen, Essen, Germany.
Maren WagemannsDepartment of Pediatric Hematology and Oncology, University Hospital Essen, Essen, Germany.
Arthur BisterDepartment of Pediatric Hematology and Oncology, University Hospital Essen, Essen, Germany.
Deniz KanberInstitute of Human Genetics, University Hospital Essen, University Duisburg Essen, Essen, Germany.
Laura SteenpassHuman and Animal Cell Lines, Leibniz Institute DSMZ German Collection of Microorganisms and Cell Cultures, 38124, Braunschweig, Germany.
Kathrin SchrammDivision of Pediatric Glioma Research, Hopp Children's Cancer Center (KiTZ), Heidelberg, Germany.
Barbara JonesDivision of Pediatric Glioma Research, Hopp Children's Cancer Center (KiTZ), Heidelberg, Germany.
David T W JonesDivision of Pediatric Glioma Research, Hopp Children's Cancer Center (KiTZ), Heidelberg, Germany.ORCID 0000-0002-2036-5141
Eva BiewaldDepartment of Ophthalmology, Medical Faculty, University of Duisburg-Essen, 45147, Essen, Germany.
Kathy AstrahantseffDepartment of Pediatric Oncology and Hematology, Charité - University Medicine Berlin, Berlin, Germany.ORCID 0000-0002-7872-1997
Helmut HanenbergDepartment of Pediatric Hematology and Oncology, University Hospital Essen, Essen, Germany.
Sven RahmannAlgorithmic Bioinformatics, Center for Bioinformatics Saar and Saarland University, Saarland Informatics Campus, Saarbrücken, Germany.
Dietmar R LohmannInstitute of Human Genetics, University Hospital Essen, University Duisburg Essen, Essen, Germany.
Alexander SchrammLaboratory for Molecular Oncology, Department of Medical Oncology, West German Cancer Center, University Hospital Essen, University of Duisburg-Essen, Essen, Germany.ORCID 0000-0001-7670-7529
Petra KettelerDepartment of Pediatric Hematology and Oncology, University Hospital Essen, Essen, Germany. petra.ketteler@uk-essen.de.ORCID 0000-0002-8138-0441

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Retinoblastoma are childhood eye tumors arising from retinal precursor cells. Two distinct retinoblastoma subtypes with different clinical behavior have been described based on gene expression and methylation profiling. Using consensus clustering of DNA methylation analysis from 61 retinoblastomas, we identify a MYCN-driven cluster of subtype 2 retinoblastomas characterized by DNA hypomethylation and high expression of genes involved in protein synthesis. Subtype 2 retinoblastomas outside the MYCN-driven cluster are characterized by high expression of genes from mesodermal development, including NKX2-5. Knockdown of MYCN expression in retinoblastoma cell models causes growth arrest and reactivates a subtype 1-specific photoreceptor signature. These molecular changes suggest that removing the driving force of MYCN oncogenic activity rescues molecular circuitry driving subtype 1 biology. The MYCN-RB gene signature generated from the cell models better identifies MYCN-driven retinoblastoma than MYCN amplification and can identify cases that may benefit from MYCN-targeted therapy. MYCN drives tumor progression in a molecularly defined retinoblastoma subgroup, and inhibiting MYCN activity could restore a more differentiated and less aggressive tumor biology.

Indexed as

N-Myc Proto-Oncogene ProteinRetinoblastomaCell DedifferentiationCell Line, TumorChild, PreschoolDNA MethylationFemaleGene Expression Regulation, NeoplasticHumansMaleRetinal NeoplasmsMYCN protein, humanN-Myc Proto-Oncogene Protein

Identifiers

PMID39079981
PMCPMC11289481

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.