Evidence map›Paper›PMID 39079955›Full record

ArticleNature communications2024

A genetic-epigenetic interplay at 1q21.1 locus underlies CHD1L-mediated vulnerability to primary progressive multiple sclerosis.

Majid Pahlevan Kakhki, Antonino Giordano, Chiara Starvaggi Cucuzza, Tejaswi Venkata S Badam, Samudyata Samudyata, Marianne Victoria Lemée, Pernilla Stridh, Asimenia Gkogka, Klementy Shchetynsky, Adil Harroud and 17 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. CRISPR-Based Gene Therapy for Brain Disease.Molecular neurobiology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

27 authors.

Majid Pahlevan KakhkiDepartment of Clinical Neuroscience, Karolinska Institutet, Center for Molecular Medicine, Karolinska University Hospital, Stockholm, Sweden.ORCID 0000-0002-5407-3147
Antonino Giordano *Department of Clinical Neuroscience, Karolinska Institutet, Center for Molecular Medicine, Karolinska University Hospital, Stockholm, Sweden.
Chiara Starvaggi Cucuzza *Department of Clinical Neuroscience, Karolinska Institutet, Center for Molecular Medicine, Karolinska University Hospital, Stockholm, Sweden.ORCID 0000-0002-9088-7658
Tejaswi Venkata S Badam *Department of Clinical Neuroscience, Karolinska Institutet, Center for Molecular Medicine, Karolinska University Hospital, Stockholm, Sweden.
Samudyata Samudyata *Department of Physiology and Pharmacology, Karolinska Institutet, Stockholm, Sweden.
Marianne Victoria Lemée *Institut de Génétique et de Biologie Moléculaire et Cellulaire, Illkirch, France.ORCID 0000-0002-4897-0722
Pernilla StridhDepartment of Clinical Neuroscience, Karolinska Institutet, Center for Molecular Medicine, Karolinska University Hospital, Stockholm, Sweden.ORCID 0000-0003-4855-0039
Asimenia GkogkaDepartment of Physiology and Pharmacology, Karolinska Institutet, Stockholm, Sweden.
Klementy ShchetynskyDepartment of Clinical Neuroscience, Karolinska Institutet, Center for Molecular Medicine, Karolinska University Hospital, Stockholm, Sweden.
Adil HarroudThe Neuro (Montreal Neurological Institute-Hospital), Montréal, QC, Canada.ORCID 0000-0003-2616-7274
Alexandra GyllenbergDepartment of Clinical Neuroscience, Karolinska Institutet, Center for Molecular Medicine, Karolinska University Hospital, Stockholm, Sweden.
Yun LiuMOE Key Laboratory of Metabolism and Molecular Medicine, Department of Biochemistry and Molecular Biology, School of Basic Medical Sciences and Shanghai Xuhui Central Hospital, Fudan University, Shanghai, China.
Sanjaykumar BoddulDepartment of Medicine, Solna, Karolinska Institutet, Center for Molecular Medicine, Karolinska University Hospital, Stockholm, Sweden.
Tojo JamesDepartment of Clinical Neuroscience, Karolinska Institutet, Center for Molecular Medicine, Karolinska University Hospital, Stockholm, Sweden.
Melissa SorosinaLaboratory of Human Genetics of Neurological Disorders, Division of Neuroscience, IRCCS San Raffaele Scientific Institute, Milan, Italy.
Massimo FilippiNeurology and Neurorehabilitation Units, IRCCS San Raffaele Hospital, Milan, Italy.ORCID 0000-0002-5485-0479
Federica EspositoNeurology and Neurorehabilitation Units, IRCCS San Raffaele Hospital, Milan, Italy.
Fredrik WermelingDepartment of Medicine, Solna, Karolinska Institutet, Center for Molecular Medicine, Karolinska University Hospital, Stockholm, Sweden.ORCID 0000-0001-9633-677X
Mika GustafssonDepartment of Bioinformatics, Institute for Physics chemistry and Biology (IFM), Linköping university, Linköping, Sweden.ORCID 0000-0002-0048-4063
Patrizia CasacciaDepartment of Neurology, Icahn School of Medicine at Mount Sinai, New York, USA.ORCID 0000-0002-4785-9264
Jan HillertDepartment of Clinical Neuroscience, Karolinska Institutet, Center for Molecular Medicine, Karolinska University Hospital, Stockholm, Sweden.
Tomas OlssonDepartment of Clinical Neuroscience, Karolinska Institutet, Center for Molecular Medicine, Karolinska University Hospital, Stockholm, Sweden.
Ingrid KockumDepartment of Clinical Neuroscience, Karolinska Institutet, Center for Molecular Medicine, Karolinska University Hospital, Stockholm, Sweden.ORCID 0000-0002-0867-4726
Carl M SellgrenDepartment of Physiology and Pharmacology, Karolinska Institutet, Stockholm, Sweden.ORCID 0000-0001-9103-2785
Christelle GolzioInstitut de Génétique et de Biologie Moléculaire et Cellulaire, Illkirch, France.
Lara KularDepartment of Clinical Neuroscience, Karolinska Institutet, Center for Molecular Medicine, Karolinska University Hospital, Stockholm, Sweden. lara.kular@ki.se.ORCID 0000-0002-2907-6071
Maja JagodicDepartment of Clinical Neuroscience, Karolinska Institutet, Center for Molecular Medicine, Karolinska University Hospital, Stockholm, Sweden. maja.jagodic@ki.se.ORCID 0000-0003-0756-889X

Funding

Environmental Biosensors in the Oligodendrocyte LineageR35NS111604 · NINDS · ADVANCED SCIENCE RESEARCH CENTER · PI Patrizia Casaccia · 2019 to 2026
$9.1M
Agence Nationale de la Recherche (French National Research Agency) JCJC ANR-17-CE12-0006EC | EC Seventh Framework Programm | FP7 Ideas: European Research Council (FP7-IDEAS-ERC - Specific Programme: "Ideas" Implementing the Seventh Framework Programme of the European Community for Research, Technological Development and Demonstration Activities (2007 to 2013)) 818170NINDS NIH HHS R35 NS111604
6 · The paper itself

Abstract

Multiple Sclerosis (MS) is a heterogeneous inflammatory and neurodegenerative disease with an unpredictable course towards progressive disability. Treating progressive MS is challenging due to limited insights into the underlying mechanisms. We examined the molecular changes associated with primary progressive MS (PPMS) using a cross-tissue (blood and post-mortem brain) and multilayered data (genetic, epigenetic, transcriptomic) from independent cohorts. In PPMS, we found hypermethylation of the 1q21.1 locus, controlled by PPMS-specific genetic variations and influencing the expression of proximal genes (CHD1L, PRKAB2) in the brain. Evidence from reporter assay and CRISPR/dCas9 experiments supports a causal link between methylation and expression and correlation network analysis further implicates these genes in PPMS brain processes. Knock-down of CHD1L in human iPSC-derived neurons and knock-out of chd1l in zebrafish led to developmental and functional deficits of neurons. Thus, several lines of evidence suggest a distinct genetic-epigenetic-transcriptional interplay in the 1q21.1 locus potentially contributing to PPMS pathogenesis.

Indexed as

BrainChromosomes, Human, Pair 1DNA-Binding ProteinsDNA MethylationEpigenesis, GeneticZebrafishAdultAnimalsDNA HelicasesFemaleGenetic Predisposition to DiseaseHumansInduced Pluripotent Stem CellsMaleMiddle AgedMultiple Sclerosis, Chronic ProgressiveDNA-Binding ProteinsDNA Helicases

Identifiers

PMID39079955
PMCPMC11289459

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.