Evidence map›Paper›PMID 39078675›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2024

Exploring a unique class of flavoenzymes: Identification and biochemical characterization of ribosomal RNA dihydrouridine synthase.

Sabrine Toubdji, Quentin Thullier, Lea-Marie Kilz, Virginie Marchand, Yifeng Yuan, Claudia Sudol, Catherine Goyenvalle, Olivier Jean-Jean, Simon Rose, Stephen Douthwaite and 7 more

Erratum issuedAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Compendium of RNA modifications for bacterial stress adaptation.Microbiology and molecular biology reviews : MMBR · 2026
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Sabrine ToubdjiSorbonne Université, CNRS, Institut de Biologie Paris Seine, Biology of Aging and Adaptation, Institut de Biologie Paris-Seine, F-75252 Paris Cedex 05, France.ORCID 0009-0001-7594-5020
Quentin ThullierUniversité de Lorraine, CNRS, Institut National de la Santé et de la Recherche Médicale, Ingénierie-Biologie-Santé en Lorraine, Epitranscriptomique et Séquençage Core Facility, F-54000 Nancy, France.
Lea-Marie KilzInstitut für Pharmazeutische und Biomedizinische Wissenschaften, Johannes Gutenberg-Universität, Mainz D-55128, Germany.
Virginie MarchandUniversité de Lorraine, CNRS, Institut National de la Santé et de la Recherche Médicale, Ingénierie-Biologie-Santé en Lorraine, Epitranscriptomique et Séquençage Core Facility, F-54000 Nancy, France.
Yifeng YuanDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL 32611.
Claudia SudolSorbonne Université, CNRS, Institut de Biologie Paris Seine, Biology of Aging and Adaptation, Institut de Biologie Paris-Seine, F-75252 Paris Cedex 05, France.
Catherine GoyenvalleSorbonne Université, CNRS, Institut de Biologie Paris Seine, Biology of Aging and Adaptation, Institut de Biologie Paris-Seine, F-75252 Paris Cedex 05, France.
Olivier Jean-JeanSorbonne Université, CNRS, Institut de Biologie Paris Seine, Biology of Aging and Adaptation, Institut de Biologie Paris-Seine, F-75252 Paris Cedex 05, France.ORCID 0000-0001-6502-9937
Simon RoseDepartment of Biochemistry and Molecular Biology, University of Southern Denmark, DK-5230 Odense M, Denmark.
Stephen DouthwaiteDepartment of Biochemistry and Molecular Biology, University of Southern Denmark, DK-5230 Odense M, Denmark.ORCID 0000-0001-5468-8486
Léo HardyInstitut Pasteur, Université Paris Cité, CNRS UMR3525, Unité Plasticité du Génome Bactérien, F-75015 Paris, France.
Zeynep BaharogluInstitut Pasteur, Université Paris Cité, CNRS UMR3525, Unité Plasticité du Génome Bactérien, F-75015 Paris, France.ORCID 0000-0003-3477-2685
Valérie de Crécy-LagardDepartment of Microbiology and Cell Science, University of Florida, Gainesville, FL 32611.ORCID 0000-0002-9955-3785
Mark HelmInstitut für Pharmazeutische und Biomedizinische Wissenschaften, Johannes Gutenberg-Universität, Mainz D-55128, Germany.
Yuri MotorinUniversité de Lorraine, CNRS, Institut National de la Santé et de la Recherche Médicale, Ingénierie-Biologie-Santé en Lorraine, Epitranscriptomique et Séquençage Core Facility, F-54000 Nancy, France.
Djemel HamdaneCollège De France, Sorbonne Université, CNRS, Laboratoire de Chimie des Processus Biologiques, F-75231, Paris Cedex 05, France.ORCID 0000-0002-1737-8320
Damien BrégeonSorbonne Université, CNRS, Institut de Biologie Paris Seine, Biology of Aging and Adaptation, Institut de Biologie Paris-Seine, F-75252 Paris Cedex 05, France.ORCID 0000-0003-1113-7574

Funding

Study of queuosine salvage and function in eukaryotes; a forgotten micronutrientR01GM132254 · NIGMS · UNIVERSITY OF FLORIDA · PI ALFONZO, JUAN D, DE CRECY-LAGARD, VALERIE A · 2019 to 2022
$1.6M
Agence Nationale de la Recherche (ANR) 20-CE92-0030Animal Health and Welfare ERA-Net (ANIHWA) GM132254Deutsche Forschungsgemeinschaft (DFG) 439669440 - TRR-319-TP C01 and HE 3397/21-1NIGMS NIH HHS R01 GM132254Science Ministry | Forskerakademiet (Danish Research Academy) FNU-rammebevilling 10-084554
6 · The paper itself

Abstract

Dihydrouridine (D), a prevalent and evolutionarily conserved base in the transcriptome, primarily resides in tRNAs and, to a lesser extent, in mRNAs. Notably, this modification is found at position 2449 in the

Indexed as

Escherichia coliEscherichia coli ProteinsRNA, BacterialRNA, Ribosomal, 23SUridineEscherichia coli ProteinsRNA, BacterialRNA, Ribosomal, 23SUridinedihydrouridinedihydrouridine synthaseflavoenzymeRNA modificationrRNA

Identifiers

PMID39078675
PMCPMC11317573

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.