Evidence map›Paper›PMID 39074142›Full record

ArticlePLoS pathogens2024

The origin, deployment, and evolution of a plant-parasitic nematode effectorome.

Beth Molloy, Dio S Shin, Jonathan Long, Clement Pellegrin, Beatrice Senatori, Paulo Vieira, Peter J Thorpe, Anika Damm, Mariam Ahmad, Kerry Vermeulen and 10 more

Abstract read
In one paragraph

Article in PLoS pathogens, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Multiplexed Fluorescent In Situ Hybridization in Plant-Parasitic Nematodes.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. The SUbventral-Gland Regulator (SUGR-1) of nematode virulence.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors.

Beth MolloyThe Crop Science Centre, Department of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.
Dio S ShinThe Crop Science Centre, Department of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.
Jonathan LongThe Crop Science Centre, Department of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.
Clement PellegrinThe Crop Science Centre, Department of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.
Beatrice SenatoriThe Crop Science Centre, Department of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.
Paulo VieiraMycology and Nematology Genetic Diversity and Biology Laboratory, United States Department of Agriculture-Agricultural Research Service, Beltsville, Maryland, United States of America.
Peter J ThorpeThe Data Analysis Group, School of Life Sciences, University of Dundee, Dundee, Scotland, United Kingdom.
Anika DammThe Crop Science Centre, Department of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.
Mariam AhmadThe Crop Science Centre, Department of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.
Kerry VermeulenThe Crop Science Centre, Department of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.
Lida DerevninaThe Crop Science Centre, Department of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.
Siyuan WeiThe Crop Science Centre, Department of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.
Alexis SperlingThe Crop Science Centre, Department of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.
Estefany Reyes EstévezThe Crop Science Centre, Department of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.
Samuel BrutyThe Crop Science Centre, Department of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.
Victor Hugo Moura de SouzaThe Crop Science Centre, Department of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.
Olaf Prosper KranseThe Crop Science Centre, Department of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.
Tom MaierDepartment of Plant Pathology, Entomology and Microbiology, Iowa State University, Ames, Iowa, United States of America.
Thomas BaumDepartment of Plant Pathology, Entomology and Microbiology, Iowa State University, Ames, Iowa, United States of America.
Sebastian Eves-van den AkkerThe Crop Science Centre, Department of Plant Sciences, University of Cambridge, Cambridge, United Kingdom.ORCID 0000-0002-8833-9679

Funding

BBSRC BB/R011311/1BBSRC BB/S006397/1BBSRC BB/X006352/1BBSRC BB/Y513246/1
6 · The paper itself

Abstract

Plant-parasitic nematodes constrain global food security. During parasitism, they secrete effectors into the host plant from two types of pharyngeal gland cells. These effectors elicit profound changes in host biology to suppress immunity and establish a unique feeding organ from which the nematode draws nutrition. Despite the importance of effectors in nematode parasitism, there has been no comprehensive identification and characterisation of the effector repertoire of any plant-parasitic nematode. To address this, we advance techniques for gland cell isolation and transcriptional analysis to define a stringent annotation of putative effectors for the cyst nematode Heterodera schachtii at three key life-stages. We define 717 effector gene loci: 269 "known" high-confidence homologs of plant-parasitic nematode effectors, and 448 "novel" effectors with high gland cell expression. In doing so we define the most comprehensive "effectorome" of a plant-parasitic nematode to date. Using this effector definition, we provide the first systems-level understanding of the origin, deployment and evolution of a plant-parasitic nematode effectorome. The robust identification of the effector repertoire of a plant-parasitic nematode will underpin our understanding of nematode pathology, and hence, inform strategies for crop protection.

Indexed as

Host-Parasite InteractionsPlant DiseasesAnimalsHelminth ProteinsNematodaPlantsTylenchoideaHelminth Proteins

Identifiers

PMID39074142
PMCPMC11309470

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.