Evidence map›Paper›PMID 39074138›Full record

ArticlePLoS computational biology2024

Derivation and simulation of a computational model of active cell populations: How overlap avoidance, deformability, cell-cell junctions and cytoskeletal forces affect alignment.

Vivienne Leech, Fiona N Kenny, Stefania Marcotti, Tanya J Shaw, Brian M Stramer, Angelika Manhart

Abstract read
In one paragraph

Article in PLoS computational biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Vivienne LeechDepartment of Mathematics, University College London, London, United Kingdom.
Fiona N KennyRandall Centre for Cell and Molecular Biophysics, King's College London, London, United Kingdom.
Stefania MarcottiRandall Centre for Cell and Molecular Biophysics, King's College London, London, United Kingdom.ORCID 0000-0002-2877-0133
Tanya J ShawRandall Centre for Cell and Molecular Biophysics, King's College London, London, United Kingdom.
Brian M StramerRandall Centre for Cell and Molecular Biophysics, King's College London, London, United Kingdom.
Angelika ManhartDepartment of Mathematics, University College London, London, United Kingdom.ORCID 0000-0002-0303-8114

Funding

BBSRC BB/V006169/1Wellcome Trust
6 · The paper itself

Abstract

Collective alignment of cell populations is a commonly observed phenomena in biology. An important example are aligning fibroblasts in healthy or scar tissue. In this work we derive and simulate a mechanistic agent-based model of the collective behaviour of actively moving and interacting cells, with a focus on understanding collective alignment. The derivation strategy is based on energy minimisation. The model ingredients are motivated by data on the behaviour of different populations of aligning fibroblasts and include: Self-propulsion, overlap avoidance, deformability, cell-cell junctions and cytoskeletal forces. We find that there is an optimal ratio of self-propulsion speed and overlap avoidance that maximises collective alignment. Further we find that deformability aids alignment, and that cell-cell junctions by themselves hinder alignment. However, if cytoskeletal forces are transmitted via cell-cell junctions we observe strong collective alignment over large spatial scales.

Indexed as

Computer SimulationCytoskeletonIntercellular JunctionsModels, BiologicalAnimalsCell CommunicationCell MovementComputational BiologyFibroblastsHumans

Identifiers

PMID39074138
PMCPMC11309491

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.