Evidence map›Paper›PMID 39073585›Full record

ArticlePlanta2024

Transcriptome-wide m6A methylation profile reveals its potential role underlying drought response in wheat (Triticum aestivum L.).

Yan Pan, Yanzhe Jia, Wenxin Liu, Qinlong Zhao, Wenqiu Pan, Yongpeng Jia, Shuzuo Lv, Xiaoqin Liu, Xiaojun Nie

Abstract read
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In one paragraph

Article in Planta, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Genome-Wide Analysis of YTH Domain Proteins inPlants (Basel, Switzerland) · 2026
    Article
  4. Review
  5. Review
  6. Article
  7. Review
  8. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Yan Pan *State Key Laboratory of Crop Stress Biology in Arid Areas, College of Agronomy and Northwest, A&F University, Yangling, 712100, Shaanxi, China.
Yanzhe Jia *State Key Laboratory of Crop Stress Biology in Arid Areas, College of Agronomy and Northwest, A&F University, Yangling, 712100, Shaanxi, China.
Wenxin LiuState Key Laboratory of Crop Stress Biology in Arid Areas, College of Agronomy and Northwest, A&F University, Yangling, 712100, Shaanxi, China.
Qinlong ZhaoState Key Laboratory of Crop Stress Biology in Arid Areas, College of Agronomy and Northwest, A&F University, Yangling, 712100, Shaanxi, China.
Wenqiu PanState Key Laboratory of Crop Stress Biology in Arid Areas, College of Agronomy and Northwest, A&F University, Yangling, 712100, Shaanxi, China.
Yongpeng JiaHenan Key Laboratory of Industrial Microbial Resources and Fermentation Technology, Nanyang Institute of Technology, Nanyang, 743004, Henan, China.
Shuzuo LvLuoyang Academy of Agricultural and Forestry Sciences, 471027, Luoyang, Henan, China.
Xiaoqin LiuPeking University Institute of Advanced Agricultural Science, 261325, Weifang, Shandong, China. xiaoqin.liu@pku-iaas.edu.cn.
Xiaojun NieState Key Laboratory of Crop Stress Biology in Arid Areas, College of Agronomy and Northwest, A&F University, Yangling, 712100, Shaanxi, China. small@nwsuaf.edu.cn.ORCID http://orcid.org/0000-0002-4787-7550

Funding

National Natural Science Foundation of China 31971885National Natural Science Foundation of China 32372100
6 · The paper itself

Abstract

MAIN

conclusionThis study revealed the transcriptome-wide m6A methylation profile under drought stress and found that TaETC9 might regulate drought tolerance through mediating RNA methylation in wheat. Drought is one of the most destructive environmental constraints limiting crop growth and development. N6-methyladenosine (m6A) is a prevalent and important post-transcriptional modification in various eukaryotic RNA molecules, playing the crucial role in regulating drought response in plants. However, the significance of m6A in wheat (Triticum aestivum L.), particularly its involvment in drought response, remains underexplored. In this study, we investigated the transcriptome-wide m6A profile under drought stress using parallel m6A immunoprecipitation sequencing (MeRIP-seq). Totally, 4221 m6A peaks in 3733 m6A-modified genes were obtained, of which 373 methylated peaks exhibited differential expression between the control (CK) and drought-stressed treatments. These m6A loci were significantly enriched in proximity to stop codons and within the 3'-untranslated region. Integration of MeRIP-seq and RNA-seq revealed a positive correlation between m6A methylation and mRNA abundance and the genes displaying both differential methylation and expression were obtained. Finally, qRT-PCR analyses were further performed and the results found that the m6A-binding protein (TaETC9) showed significant up-regulation, while the m6A demethylase (TaALKBH10B) was significantly down-regulated under drought stress, contributing to increased m6A levels. Furthermore, the loss-of-function mutant of TaECT9 displayed significantly higher drought sensitivity compared to the wild type, highlighting its role in regulating drought tolerance. This study reported the first wheat m6A profile associated with drought stress, laying the groundwork for unraveling the potential role of RNA methylation in drought responses and enhancing stress tolerance in wheat through epigenetic approaches.

Indexed as

AdenosineDroughtsGene Expression Regulation, PlantStress, PhysiologicalTranscriptomeTriticumMethylationPlant ProteinsAdenosineN-methyladenosinePlant ProteinsDroughtm6AMeRIP-seqRNA methylationWheat

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.