Evidence map›Paper›PMID 39073063›Full record

ArticleeLife2024

A genome-wide CRISPR/Cas9 screen identifies calreticulin as a selective repressor of ATF6α.

Joanne Tung, Lei Huang, Ginto George, Heather P Harding, David Ron, Adriana Ordonez

Abstract read
In one paragraph

Article in eLife, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Joanne TungCambridge Institute for Medical Research (CIMR), University of Cambridge, Cambridge Biomedical Campus, Cambridge, United Kingdom.ORCID https://orcid.org/0009-0006-3733-8218
Lei HuangCambridge Institute for Medical Research (CIMR), University of Cambridge, Cambridge Biomedical Campus, Cambridge, United Kingdom.
Ginto GeorgeCambridge Institute for Medical Research (CIMR), University of Cambridge, Cambridge Biomedical Campus, Cambridge, United Kingdom.ORCID https://orcid.org/0000-0003-4804-9594
Heather P HardingCambridge Institute for Medical Research (CIMR), University of Cambridge, Cambridge Biomedical Campus, Cambridge, United Kingdom.ORCID https://orcid.org/0000-0002-7359-7974
David RonCambridge Institute for Medical Research (CIMR), University of Cambridge, Cambridge Biomedical Campus, Cambridge, United Kingdom.ORCID https://orcid.org/0000-0002-3014-5636
Adriana OrdonezCambridge Institute for Medical Research (CIMR), University of Cambridge, Cambridge Biomedical Campus, Cambridge, United Kingdom.ORCID https://orcid.org/0000-0003-4239-459X

Funding

Wellcome TrustWellcome Trust 10.35802/224407
6 · The paper itself

Abstract

Activating transcription factor 6 (ATF6) is one of three endoplasmic reticulum (ER) transmembrane stress sensors that mediate the unfolded protein response (UPR). Despite its crucial role in long-term ER stress adaptation, regulation of ATF6 alpha (α) signalling remains poorly understood, possibly because its activation involves ER-to-Golgi and nuclear trafficking. Here, we generated an ATF6α/Inositol-requiring kinase 1 (IRE1) dual UPR reporter CHO-K1 cell line and performed an unbiased genome-wide CRISPR/Cas9 mutagenesis screen to systematically profile genetic factors that specifically contribute to ATF6α signalling in the presence and absence of ER stress. The screen identified both anticipated and new candidate genes that regulate ATF6α activation. Among these, calreticulin (CRT), a key ER luminal chaperone, selectively repressed ATF6α signalling: Cells lacking CRT constitutively activated a BiP::sfGFP ATF6α-dependent reporter, had higher BiP levels and an increased rate of trafficking and processing of ATF6α. Purified CRT interacted with the luminal domain of ATF6α

Indexed as

Activating Transcription Factor 6CalreticulinCricetulusCRISPR-Cas SystemsAnimalsCHO CellsEndoplasmic Reticulum StressHumansProtein Serine-Threonine KinasesSignal TransductionUnfolded Protein ResponseActivating Transcription Factor 6ATF6 protein, humanCalreticulinProtein Serine-Threonine KinasesATF6⍺calreticulincell biologyCHO-K1 cellsCRTendoplasmic reticulumgenome-wide CRISPR/Cas9 screenunfolded protein responseUPR

Identifiers

PMID39073063
PMCPMC11286266

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.