Evidence map›Paper›PMID 39071437›Full record

ArticlebioRxiv : the preprint server for biology2024

Proxi-RIMS-seq2 applied to native microbiomes uncovers hundreds of known and novel

Weiwei Yang, Yvette Luyten, Emily Reister, Hayley Mangelson, Zach Sisson, Benjamin Auch, Ivan Liachko, Richard J Roberts, Laurence Ettwiller

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Weiwei YangNew England Biolabs Inc., 240 County Road, Ipswich, MA 01938, United States.
Yvette LuytenNew England Biolabs Inc., 240 County Road, Ipswich, MA 01938, United States.
Emily ReisterPhase Genomics Inc, 1617 8th Ave N Seattle, WA 98109, United States.
Hayley MangelsonPhase Genomics Inc, 1617 8th Ave N Seattle, WA 98109, United States.ORCID 0000-0002-1520-9099
Zach SissonPhase Genomics Inc, 1617 8th Ave N Seattle, WA 98109, United States.
Benjamin AuchPhase Genomics Inc, 1617 8th Ave N Seattle, WA 98109, United States.
Ivan LiachkoPhase Genomics Inc, 1617 8th Ave N Seattle, WA 98109, United States.ORCID 0000-0001-6972-6705
Richard J RobertsNew England Biolabs Inc., 240 County Road, Ipswich, MA 01938, United States.ORCID 0000-0002-4348-0169
Laurence EttwillerNew England Biolabs Inc., 240 County Road, Ipswich, MA 01938, United States.ORCID 0000-0002-3957-6539

Funding

Therapeutic phage host-range prediction using proximity-guided metagenomics and artificial intelligenceR44AI172703 · NIAID · PHASE GENOMICS, INC. · PI LIACHKO, IVAN · 2022 to 2023
$2.0M
NIAID NIH HHS R44 AI172703
6 · The paper itself

Abstract

Methylation patterns in bacteria can be used to study Restriction-Modification (RM) or other defense systems with novel properties. While

Identifiers

PMID39071437
PMCPMC11275837

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.