Evidence map›Paper›PMID 39071394›Full record

ArticlebioRxiv : the preprint server for biology2024

Resolving DJ-1 Glyoxalase Catalysis Using Mix-and-Inject Serial Crystallography at a Synchrotron.

Kara A Zielinski, Cole Dolamore, Kevin M Dalton, Nathan Smith, John Termini, Robert Henning, Vukica Srajer, Doeke R Hekstra, Lois Pollack, Mark A Wilson

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Kara A ZielinskiSchool of Applied and Engineering Physics, Cornell University, Ithaca, NY 14853.
Cole DolamoreDepartment of Biochemistry, University of Nebraska, Lincoln, NE 68588.
Kevin M DaltonDepartment of Biology, New York University, New York, NY 10003.
Nathan SmithDepartment of Biochemistry, University of Nebraska, Lincoln, NE 68588.
John TerminiDepartment of Molecular Medicine, Beckman Research Institute at City of Hope, Duarte, CA 91010.
Robert HenningBioCARS, Center for Advanced Radiation Sources, The University of Chicago, Lemont, IL 60439.
Vukica SrajerBioCARS, Center for Advanced Radiation Sources, The University of Chicago, Lemont, IL 60439.
Doeke R HekstraDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, MA 02138.
Lois PollackSchool of Applied and Engineering Physics, Cornell University, Ithaca, NY 14853.ORCID 0000-0002-9366-4396
Mark A WilsonDepartment of Biochemistry, University of Nebraska, Lincoln, NE 68588.ORCID 0000-0001-6317-900X

Funding

Training and OutreachP30GM124166 · NIGMS · CORNELL UNIVERSITY · PI RICHARD A. CERIONE · 2019 to 2026
$28.3M
Electric Field-stimulated Protein MechanicsP41GM118217 · NIGMS · UNIVERSITY OF CHICAGO · PI MOFFAT, JOHN KEITH, RANGANATHAN, RAMA · 2019 to 2021
$5.3M
Nucleic acid interactions with partners: ions and proteinsR35GM122514 · NIGMS · CORNELL UNIVERSITY · PI Lois Pollack · 2017 to 2026
$3.8M
Identifying Principles of Protein Mechanics by Applying Force and Observing MotionDP2GM141000 · NIGMS · HARVARD UNIVERSITY · PI HEKSTRA, DOEKE ROMKE · 2020 to 2020
$2.4M
Time-Resolved X-ray Crystallography of Dynamics in Cysteine-Dependent EnzymesR01GM139978 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI WILSON, MARK A. · 2020 to 2023
$1.2M
Time-resolved structural studies of enzyme catalysis and regulationR35GM153337 · NIGMS · UNIVERSITY OF NEBRASKA LINCOLN · PI Mark A. Wilson · 2024 to 2026
$1.0M
NIGMS NIH HHS DP2 GM141000NIGMS NIH HHS P30 GM124166NIGMS NIH HHS P41 GM118217NIGMS NIH HHS R01 GM139978NIGMS NIH HHS R35 GM122514NIGMS NIH HHS R35 GM153337
6 · The paper itself

Abstract

DJ-1 (PARK7) is an intensively studied protein whose cytoprotective activities are dysregulated in multiple diseases. DJ-1 has been reported as having two distinct enzymatic activities in defense against reactive carbonyl species that are difficult to distinguish in conventional biochemical experiments. Here, we establish the mechanism of DJ-1 using a synchrotron-compatible version of mix-and-inject-serial crystallography (MISC), which was previously performed only at XFELs, to directly observe DJ-1 catalysis. We designed and used new diffusive mixers to collect time-resolved Laue diffraction data of DJ-1 catalysis at a pink beam synchrotron beamline. Analysis of structurally similar methylglyoxal-derived intermediates formed through the DJ-1 catalytic cycle shows that the enzyme catalyzes nearly two turnovers in the crystal and defines key aspects of its glyoxalase mechanism. In addition, DJ-1 shows allosteric communication between a distal site at the dimer interface and the active site that changes during catalysis. Our results rule out the widely cited deglycase mechanism for DJ-1 action and provide an explanation for how DJ-1 produces L-lactate with high chiral purity.

Indexed as

DJ-1enzyme mechanismglyoxalaseLaue diffractionPARK7serial crystallographytime-resolved crystallography

Identifiers

PMID39071394
PMCPMC11275809

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.