Evidence map›Paper›PMID 39071386›Full record

ArticlebioRxiv : the preprint server for biology2024

TRGT-denovo: accurate detection of

T Mokveld, E Dolzhenko, H Dashnow, T J Nicholas, T Sasani, B van der Sanden, B Jadhav, B Pedersen, Z Kronenberg, A Tucci and 5 more

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

T MokveldPacBio, Menlo Park, CA.
E DolzhenkoPacBio, Menlo Park, CA.
H DashnowUniv. of Utah, Salt Lake City, UT.
T J NicholasUniv. of Utah, Salt Lake City, UT.
T SasaniUniv. of Utah, Salt Lake City, UT.
B van der SandenDepartment of Human Genetics, Research Institute for Medical Innovation, Radboud university medical center, Nijmegen, the Netherlands.
B JadhavIcahn School of Medicine at Mount Sinai, New York, NY.
B PedersenUniv. of Utah, Salt Lake City, UT.
Z KronenbergPacBio, Menlo Park, CA.
A TucciGenomics England, London, UK.
A J SharpIcahn School of Medicine at Mount Sinai, New York, NY.
A R QuinlanUniv. of Utah, Salt Lake City, UT.
C GilissenDepartment of Human Genetics, Research Institute for Medical Innovation, Radboud university medical center, Nijmegen, the Netherlands.
A HoischenDepartment of Human Genetics, Research Institute for Medical Innovation, Radboud university medical center, Nijmegen, the Netherlands.
M A EberlePacBio, Menlo Park, CA.

Funding

New algorithms and tools for large-scale genomic analysesR01HG012252 · NHGRI · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI Aaron R Quinlan · 2022 to 2026
$3.2M
New algorithms and tools for large-scale genomic analysesR01HG006693 · NHGRI · UNIVERSITY OF VIRGINIA · PI QUINLAN, AARON R · 2012 to 2018
$3.1M
CTSA RC2 Program at University of Utah: A Translational Platform for Rapid Genomic MedicineRC2TR004391 · NCATS · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI PAUL ESTABROOKS, MARTIN TRISTANI-FIROUZI · 2023 to 2026
$3.1M
Scalable detection and interpretation of structural variation in human genomesR01HG010757 · NHGRI · UNIVERSITY OF UTAH · PI QUINLAN, AARON R · 2020 to 2023
$2.8M
A comprehensive study of tandem repeat variation as a cause of Alzheimer's diseaseRF1AG075051 · NIA · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI SHARP, ANDREW JAMES · 2023 to 2023
$2.2M
Revealing new short tandem repeat variation in the human population across sequencing technologies: towards rare disease diagnosis and discoveryR00HG012796 · NHGRI · UNIVERSITY OF COLORADO DENVER · PI Harriet Dashnow · 2024 to 2026
$747k
Revealing new short tandem repeat variation in the human population across sequencing technologies: towards rare disease diagnosis and discoveryK99HG012796 · NHGRI · UNIVERSITY OF UTAH · PI DASHNOW, HARRIET · 2023 to 2024
$306k
NCATS NIH HHS RC2 TR004391NHGRI NIH HHS K99 HG012796NHGRI NIH HHS R00 HG012796NHGRI NIH HHS R01 HG006693NHGRI NIH HHS R01 HG010757NHGRI NIH HHS R01 HG012252NIA NIH HHS RF1 AG075051
6 · The paper itself

Abstract

Motivation: Identifying Results: We developed TRGT-denovo, a computational method designed to accurately identify all types of Availability and implementation: Built in Rust, TRGT-denovo is available as source code and a pre-compiled Linux binary along with a user guide at: https://github.com/PacificBiosciences/trgt-denovo.

Identifiers

PMID39071386
PMCPMC11275785

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.