Evidence map›Paper›PMID 39071311›Full record

ArticlebioRxiv : the preprint server for biology2024

Stepping dynamics of dynein characterized by MINFLUX.

Joseph Slivka, Emma Gleave, Devinda P Wijewardena, John T Canty, Paul R Selvin, Andrew P Carter, Ahmet Yildiz

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Joseph SlivkaDepartment of Physics, University of California at Berkeley, Berkeley CA 94720 USA.ORCID 0000-0002-7012-6368
Emma GleaveMedical Research Council Laboratory of Molecular Biology, Division of Structural Studies, Francis Crick Avenue, Cambridge, CB2 0QH, UK.
Devinda P WijewardenaDepartment of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, Urbana IL 61801 USA.ORCID 0000-0002-7917-7719
John T CantyBiophysics Graduate Group, University of California at Berkeley, Berkeley CA 94720 USA.ORCID 0000-0003-2119-7124
Paul R SelvinDepartment of Physics, University of Illinois at Urbana-Champaign, Urbana IL 61801 USA.
Andrew P CarterMedical Research Council Laboratory of Molecular Biology, Division of Structural Studies, Francis Crick Avenue, Cambridge, CB2 0QH, UK.ORCID 0000-0001-7292-5430
Ahmet YildizDepartment of Physics, University of California at Berkeley, Berkeley CA 94720 USA.ORCID 0000-0003-4792-174X

Funding

The Mechanism and Regulation of the Dynein Transport MachineryR35GM136414 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI Ahmet Yildiz · 2020 to 2026
$5.1M
How Molecular Motors Work Together to Move Cargo: Nanometer Distances and Piconewton ForcesR01GM132392 · NIGMS · UNIVERSITY OF ILLINOIS AT URBANA-CHAMPAIGN · PI SELVIN, PAUL R · 2019 to 2022
$1.2M
NIGMS NIH HHS R01 GM132392NIGMS NIH HHS R35 GM136414
6 · The paper itself

Abstract

Cytoplasmic dynein is a dimeric motor that drives minus-end directed transport on microtubules (MTs). To couple ATP hydrolysis to a mechanical step, a dynein monomer must be released from the MT before undergoing a conformational change that generates a bias towards the minus end. However, the dynamics of dynein stepping have been poorly characterized by tracking flexible regions of the motor with limited resolution. Here, we developed a cysteine-light mutant of yeast dynein and site-specifically labeled its MT-binding domain in vitro. MINFLUX tracking at sub-millisecond resolution revealed that dynein hydrolyzes one ATP per step and takes multitudes of 8 nm steps at physiological ATP. Steps are preceded by the transient movement towards the plus end. We propose that these backward "dips" correspond to MT release and subsequent diffusion of the stepping monomer around its MT-bound partner before taking a minus-end-directed conformational change of its linker. Our results reveal the order of sub-millisecond events that result in a productive step of dynein.

Identifiers

PMID39071311
PMCPMC11275781

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.