Evidence map›Paper›PMID 39071058›Full record

ArticleACS central science2024

DCAF16-Based Covalent Handle for the Rational Design of Monovalent Degraders.

Melissa Lim, Thang Do Cong, Lauren M Orr, Ethan S Toriki, Andrew C Kile, James W Papatzimas, Elijah Lee, Yihan Lin, Daniel K Nomura

Abstract read
In one paragraph

Article in ACS central science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Review
  5. Review
  6. Covalent Reprogramming of Kinase Binders to Modulate Protein Abundance.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  7. Article
  8. Small-molecule degraders for oncogenic KRASNature communications · 2026
    Article
  9. Article
  10. Article
  11. Induced proximity-based therapeutic modalities.Nature reviews. Drug discovery · 2026
    Review
  12. Review
  13. Article
  14. Review
  15. Review
  16. Article
  17. Covalent Reprogramming of Kinase Binders to Modulate Protein Homeostasis.bioRxiv : the preprint server for biology · 2025
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Melissa LimDepartment of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States.
Thang Do CongDepartment of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States.
Lauren M OrrDepartment of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States.
Ethan S TorikiDepartment of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States.
Andrew C KileNovartis-Berkeley Translational Chemical Biology Institute, Berkeley, California 94720, United States.
James W PapatzimasNovartis-Berkeley Translational Chemical Biology Institute, Berkeley, California 94720, United States.ORCID https://orcid.org/0000-0001-8944-1037
Elijah LeeDepartment of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States.
Yihan LinDepartment of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States.
Daniel K NomuraDepartment of Chemistry, University of California, Berkeley, Berkeley, California 94720, United States.ORCID https://orcid.org/0000-0003-1614-8360

Funding

Tackling Undruggable Cancer Targets using Chemoproteomic PlatformsR35CA263814 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI Daniel Nomura · 2022 to 2026
$4.6M
Harnessing E3 Ligases for Cancer TherapyR01CA240981 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI Daniel Nomura · 2019 to 2026
$4.3M
Acquisition of a Cryoprobe and Related Accessories for a 600 MHz NMR Spectrometer to Support Health Research Activities at the University of California, BerkeleyS10OD024998 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI HARTWIG, JOHN F · 2018 to 2018
$265k
NCI NIH HHS R01 CA240981NCI NIH HHS R35 CA263814NIH HHS S10 OD024998
6 · The paper itself

Abstract

Targeted protein degradation with monovalent molecular glue degraders is a powerful therapeutic modality for eliminating disease causing proteins. However, rational design of molecular glue degraders remains challenging. In this study, we sought to identify a transplantable and linker-less covalent handle that could be appended onto the exit vector of various protein-targeting ligands to induce the degradation of their respective targets. Using the BET family inhibitor JQ1 as a testbed, we synthesized and screened a series of covalent JQ1 analogs and identified a vinylsulfonyl piperazine handle that led to the potent and selective degradation of BRD4 in cells. Through chemoproteomic profiling, we identified DCAF16 as the E3 ligase responsible for BRD4 degradation-an E3 ligase substrate receptor that has been previously covalently targeted for molecular glue-based degradation of BRD4. Interestingly, we demonstrated that this covalent handle can be transplanted across a diverse array of protein-targeting ligands spanning many different protein classes to induce the degradation of CDK4, the androgen receptor, BTK, SMARCA2/4, and BCR-ABL/c-ABL. Our study reveals a DCAF16-based covalent degradative and linker-less chemical handle that can be attached to protein-targeting ligands to induce the degradation of several different classes of protein targets.

Identifiers

PMID39071058
PMCPMC11273451

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.