Evidence map›Paper›PMID 39068374›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2024

In Silico Identification of tRNA Fragments, Novel Candidates for Cancer Biomarkers, and Therapeutic Targets.

Ankita Singh, Shafaque Zahra, Simran Arora, Fiza Hamid, Shailesh Kumar

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ankita SinghDepartment of Surgical Disciplines, All India Institute of Medical Science (AIIMS), New Delhi, India.
Shafaque ZahraBioinformatics Laboratory, National Institute of Plant Genome Research (NIPGR), New Delhi, India.
Simran AroraBioinformatics Laboratory, National Institute of Plant Genome Research (NIPGR), New Delhi, India.
Fiza HamidBioinformatics Laboratory, National Institute of Plant Genome Research (NIPGR), New Delhi, India.
Shailesh KumarBioinformatics Laboratory, National Institute of Plant Genome Research (NIPGR), New Delhi, India. shailesh@nipgr.ac.in.ORCID 0000-0002-1872-9903

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The identification of a wide variety of RNA molecules using high-throughput sequencing techniques in the transcriptome pool of living organisms has revealed hidden regulatory insights in the cell. The class of non-coding RNA fragments produced from transfer RNA, or tRFs, is one such example. They are heterogeneously sized molecules with lengths ranging between 15 and 50 nt. They have a history of being dysregulated in human malignancies and other illnesses. The detection of these molecules has been made easier by a variety of bioinformatics techniques. The various types of tRFs and how they relate to cancer are covered in this chapter. It also provides a summary of the biological significance of tRFs reported in human cancer. Additionally, it emphasizes the utilities of databases and computational tools that have been created by different research teams for the investigation of tRFs. This will further aid the exploration and analysis of tRFs in cancer research and will support future advancement and a better comprehension of these molecules.

Indexed as

Biomarkers, TumorComputational BiologyNeoplasmsRNA, TransferComputer SimulationGene Expression Regulation, NeoplasticHigh-Throughput Nucleotide SequencingHumansBiomarkers, TumorRNA, TransferBiomarkerCancertncrNAstncRNA ToolkittRFstRNA fragments

Identifiers

PMID39068374

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.