ArticleMethods in molecular biology (Clifton, N.J.)2024
RNA-Seq Data Analysis for Differential Gene Expression Using HISAT2-StringTie-Ballgown Pipeline.
Article in Methods in molecular biology (Clifton, N.J.), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
32 citing papers in PubMed.
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- Telomere-to-Telomere gap-free genome assembly of the allotetraploid wild raspberry Rubus alceifolius Poir.Scientific data · 2026Article
- Comprehensive analysis of circular RNA expression dynamics and competitive endogenous RNA network mechanisms during postnatal liver development in juvenile goats.Animal bioscience · 2026Article
- Rapid Genomic Adaptation of Drosophila Melanogaster to Wolbachia Elimination.Microbial ecology · 2026Article
- Transcriptomic Analysis of Gene Expression Patterns in the Cecal Tissue of Liangshan Yanying Chickens and Arbor Acres (AA) Chickens Before 28 Days of Age.Animals : an open access journal from MDPI · 2026Article
- Inhibitory and synergistic effects of volatile organic compounds from bat caves againstmSystems · 2026Article
- DOO: integrated multi-omics resources for deep ocean organisms.Nucleic acids research · 2026Article
- Unveiling the Genetic Association Between Hemoglobin Concentration and Amyotrophic Lateral Sclerosis.Brain and behavior · 2026Article
- Integrated transcriptomic and hormonal analysis suggests a trade-off between salt/drought tolerance and thermotolerance inFrontiers in plant science · 2026Article
- Multi-Omics Reveals That Hydroxypinacolone Retinoate Alleviates UV-Induced Skin Aging via the p38/MMP9/Collagen Axis.Clinical, cosmetic and investigational dermatology · 2026Article
- The transcriptome-identified gene HaSAPK3.8 of sunflower (Helianthus annuus L.) confers drought resistance in tobacco.BMC plant biology · 2025Article
- Hypo-glycosylated FSH enhances the ovarian microenvironment for follicular development compared to fully glycosylated FSH.Cell communication and signaling : CCS · 2025Article
- Article
Corrections and comments
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Authors and funding
1 author.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Comparison of transcriptome for candidate gene discovery has become an important tool for biologists. While such studies lack the degree of resolution one gets from well-designed forward or reverse genetic studies, nevertheless, this has been a method of choice for giving coarse insight into the underlying biological processes or mechanisms. This was further accelerated with the availability of sequencing technologies. While many pipelines are available for RNA-seq data analysis, the protocol discussed here will guide the first-time users for conducting routine RNA-seq analysis using whole genome sequence as reference.
Indexed as
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.