Evidence map›Paper›PMID 39068213›Full record

ArticleNature communications2024

Oligomerization and a distinct tRNA-binding loop are important regulators of human arginyl-transferase function.

Xin Lan, Wei Huang, Su Bin Kim, Dechen Fu, Thilini Abeywansha, Jiemin Lou, Udayakumaran Balamurugan, Yong Tae Kwon, Chang Hoon Ji, Derek J Taylor and 1 more

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Xin Lan *Department of Biochemistry, Case Western Reserve University, Cleveland, OH, USA.
Wei Huang *Department of Pharmacology, Case Western Reserve University, Cleveland, OH, USA.ORCID 0000-0003-2097-8148
Su Bin Kim *Cellular Degradation Biology Center and Department of Biomedical Sciences, College of Medicine, Seoul National University, Seoul, Korea.ORCID 0000-0003-1867-6829
Dechen FuDepartment of Biochemistry, Case Western Reserve University, Cleveland, OH, USA.
Thilini AbeywanshaDepartment of Biochemistry, Case Western Reserve University, Cleveland, OH, USA.ORCID 0000-0002-2831-9852
Jiemin LouDepartment of Biochemistry, Case Western Reserve University, Cleveland, OH, USA.
Udayakumaran BalamuruganDepartment of Biochemistry, Case Western Reserve University, Cleveland, OH, USA.
Yong Tae KwonCellular Degradation Biology Center and Department of Biomedical Sciences, College of Medicine, Seoul National University, Seoul, Korea.ORCID 0000-0002-8115-3150
Chang Hoon JiCellular Degradation Biology Center and Department of Biomedical Sciences, College of Medicine, Seoul National University, Seoul, Korea. changhoon.ji@snu.ac.kr.ORCID 0000-0002-1315-838X
Derek J TaylorDepartment of Biochemistry, Case Western Reserve University, Cleveland, OH, USA. djt36@case.edu.ORCID 0000-0001-9932-1856
Yi ZhangDepartment of Biochemistry, Case Western Reserve University, Cleveland, OH, USA. yi.zhang26@case.edu.ORCID 0000-0001-8170-9983

Funding

TUMOR METABOLISM PROGRAMP30CA043703 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI Amar Desai · 1987 to 2026
$142.3M
Clinical and Translational Science Collaborative of ClevelandUL1TR002548 · NCATS · CASE WESTERN RESERVE UNIVERSITY · PI MCCOMSEY, GRACE A · 2018 to 2022
$35.5M
Clinical and Translational Science Collaborative of Northern Ohio, Catalyzing Linkages to Equity in Health (CLE Health)UM1TR004528 · NCATS · CASE WESTERN RESERVE UNIVERSITY · PI GRACE A MCCOMSEY · 2023 to 2026
$32.1M
TRD3 NMRbox: Bayesian AnalyticsP41GM111135 · NIGMS · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI HOCH, JEFFREY C · 2015 to 2024
$14.0M
Chemical, Structural and Cell-Signaling Interrogation of 15-Prostanglandin Dehydrogenase in Tissue Repair and RegenerationRM1GM142002 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI MARKOWITZ, SANFORD D., PIEPER, ANDREW A · 2021 to 2025
$6.9M
Structural and molecular determinants of protein phosphatase 2A in Alzheimer's DiseaseR01CA240993 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI NARLA, GOUTHAM, TAYLOR, DEREK JAMES · 2019 to 2023
$3.4M
Arginyl-tRNA beyond translation: mechanism and regulation of protein arginylationR35GM150678 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI Yi Zhang · 2023 to 2026
$1.9M
Molecular interactions and regulatory events of telomere proteinsR01GM133841 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI TAYLOR, DEREK JAMES · 2019 to 2022
$1.7M
p62 in Cancer: Mechanism and RegulationR00CA241301 · NCI · CASE WESTERN RESERVE UNIVERSITY · PI ZHANG, YI · 2021 to 2023
$747k
p62 in Cancer: Mechanism and RegulationK99CA241301 · NCI · UNIVERSITY OF COLORADO DENVER · PI ZHANG, YI · 2019 to 2020
$207k
Ministry of Science, ICT and Future Planning (MSIP) NRF-2020R1A5A1019023Ministry of Science, ICT and Future Planning (MSIP) NRF-2021R1A2B5B03002614Ministry of Science, ICT and Future Planning (MSIP) RS-2023-00249464NCATS NIH HHS UL1 TR002548NCATS NIH HHS UM1 TR004528NCI NIH HHS K99 CA241301NCI NIH HHS P30 CA043703NCI NIH HHS R00 CA241301NCI NIH HHS R01 CA240993NIGMS NIH HHS P41 GM111135NIGMS NIH HHS R01 GM133841NIGMS NIH HHS R35 GM150678NIGMS NIH HHS RM1 GM142002U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) CA240993U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) CA241301U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) GM142002U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) GM150678
6 · The paper itself

Abstract

The arginyl-transferase ATE1 is a tRNA-dependent enzyme that covalently attaches an arginine molecule to a protein substrate. Conserved from yeast to humans, ATE1 deficiency in mice correlates with defects in cardiovascular development and angiogenesis and results in embryonic lethality, while conditional knockouts exhibit reproductive, developmental, and neurological deficiencies. Despite the recent revelation of the tRNA binding mechanism and the catalytic cycle of yeast ATE1, the structure-function relationship of ATE1 in higher organisms is not well understood. In this study, we present the three-dimensional structure of human ATE1 in an apo-state and in complex with its tRNA cofactor and a peptide substrate. In contrast to its yeast counterpart, human ATE1 forms a symmetric homodimer, which dissociates upon binding of a substrate. Furthermore, human ATE1 includes a unique and extended loop that wraps around tRNA

Indexed as

AminoacyltransferasesProtein MultimerizationAnimalsBinding SitesHEK293 CellsHumansMiceModels, MolecularProtein BindingRNA, TransferRNA, Transfer, ArgAminoacyltransferasesarginyltransferaseRNA, TransferRNA, Transfer, Arg

Identifiers

PMID39068213
PMCPMC11283454

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.