Evidence map›Paper›PMID 39068174›Full record

ArticleNature communications2024

Nucleolytic processing of abasic sites underlies PARP inhibitor hypersensitivity in ALC1-deficient BRCA mutant cancer cells.

Natasha Ramakrishnan, Tyler M Weaver, Lindsey N Aubuchon, Ayda Woldegerima, Taylor Just, Kevin Song, Alessandro Vindigni, Bret D Freudenthal, Priyanka Verma

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Natasha RamakrishnanDivision of Oncology, Department of Medicine, Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, 63110, USA.
Tyler M WeaverDepartment of Biochemistry and Molecular Biology, Department of Cancer Biology, University of Kansas Medical Center, Kansas City, KS, 66160, USA.ORCID 0000-0002-5138-7140
Lindsey N AubuchonDivision of Oncology, Department of Medicine, Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, 63110, USA.
Ayda WoldegerimaDivision of Oncology, Department of Medicine, Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, 63110, USA.
Taylor JustDivision of Oncology, Department of Medicine, Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, 63110, USA.
Kevin SongDivision of Oncology, Department of Medicine, Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, 63110, USA.
Alessandro VindigniDivision of Oncology, Department of Medicine, Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, 63110, USA.ORCID 0000-0002-0568-5067
Bret D FreudenthalDepartment of Biochemistry and Molecular Biology, Department of Cancer Biology, University of Kansas Medical Center, Kansas City, KS, 66160, USA.ORCID 0000-0003-1449-4710
Priyanka VermaDivision of Oncology, Department of Medicine, Siteman Cancer Center, Washington University School of Medicine, St. Louis, MO, 63110, USA. vermap@wustl.edu.ORCID 0000-0002-2852-0767

Funding

MOLECULAR ONCOLOGY TRAINING GRANTT32CA113275 · NCI · WASHINGTON UNIVERSITY · PI Matthew J Walter · 2006 to 2026
$5.7M
Supplement to NIH Award 2 R35GM128562-06R35GM128562 · NIGMS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI Bret D Freudenthal · 2018 to 2026
$4.2M
Mechanisms of replication fork protection and recoveryR01CA248526 · NCI · WASHINGTON UNIVERSITY · PI Alessandro Vindigni, Lee Zou · 2020 to 2026
$3.6M
Replication fork repriming versus reversalR01CA237263 · NCI · WASHINGTON UNIVERSITY · PI Alessandro Vindigni · 2019 to 2026
$3.0M
APE1 Cleavage Mechanisms during DNA RepairR01ES029203 · NIEHS · UNIVERSITY OF KANSAS MEDICAL CENTER · PI FREUDENTHAL, BRET D · 2018 to 2022
$1.9M
Targeting base damage repair in BRCA-mutant cancersR37CA286908 · NCI · WASHINGTON UNIVERSITY · PI Priyanka Verma · 2024 to 2026
$1.2M
American Cancer Society (American Cancer Society, Inc.) IRG2113364Mary Kay Foundation (TMKF) 1022NCI NIH HHS R01 CA237263NCI NIH HHS R01 CA248526NCI NIH HHS R37 CA286908NCI NIH HHS T32 CA113275NIEHS NIH HHS R01 ES029203NIGMS NIH HHS R35 GM128562Ovarian Cancer Research Fund Alliance (Ovarian Cancer Research Fund Alliance, Inc.) ECIG202331010Rivkin Center for Ovarian Cancer (Rivkin Center) 940194Susan G. Komen (Susan G. Komen Breast Cancer Foundation) CCR231014077U.S. Department of Defense (United States Department of Defense) HT9425310133U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01CA248526U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01-ES029203U.S. Department of Health & Human Services | National Institutes of Health (NIH) R35-GM128562U.S. Department of Health & Human Services | NIH | National Cancer Institute (NCI) R37-CA286908V Foundation for Cancer Research (V Foundation) V2022-025
6 · The paper itself

Abstract

Clinical success with poly (ADP-ribose) polymerase inhibitors (PARPi) is impeded by inevitable resistance and associated cytotoxicity. Depletion of Amplified in Liver Cancer 1 (ALC1), a chromatin-remodeling enzyme, can overcome these limitations by hypersensitizing BReast CAncer genes 1/2 (BRCA1/2) mutant cells to PARPi. Here, we demonstrate that PARPi hypersensitivity upon ALC1 loss is reliant on its role in promoting the repair of chromatin buried abasic sites. We show that ALC1 enhances the ability of the abasic site processing enzyme, Apurinic/Apyrimidinic endonuclease 1 (APE1) to cleave nucleosome-occluded abasic sites. However, unrepaired abasic sites in ALC1-deficient cells are readily accessed by APE1 at the nucleosome-free replication forks. APE1 cleavage leads to fork breakage and trapping of PARP1/2 upon PARPi treatment, resulting in hypersensitivity. Collectively, our studies reveal how cells overcome the chromatin barrier to repair abasic lesions and uncover cleavage of abasic sites as a mechanism to overcome limitations of PARPi.

Indexed as

BRCA1 ProteinBRCA2 ProteinDNA-(Apurinic or Apyrimidinic Site) LyaseDNA RepairPoly(ADP-ribose) Polymerase InhibitorsBreast NeoplasmsCell Line, TumorChromatinDNA-Binding ProteinsDNA DamageDNA HelicasesDNA ReplicationFemaleHumansMutationNucleosomesAPEX1 protein, humanBRCA1 ProteinBRCA1 protein, humanBRCA2 ProteinBRCA2 protein, humanCHD1L protein, humanChromatinDNA-(Apurinic or Apyrimidinic Site) LyaseDNA-Binding ProteinsDNA HelicasesNucleosomesPARP1 protein, humanPoly (ADP-Ribose) Polymerase-1Poly(ADP-ribose) Polymerase Inhibitors

Identifiers

PMID39068174
PMCPMC11283519

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.