Evidence map›Paper›PMID 39068162›Full record

ArticleNature communications2024

Disentangling plant- and environment-mediated drivers of active rhizosphere bacterial community dynamics during short-term drought.

Sreejata Bandopadhyay, Xingxing Li, Alan W Bowsher, Robert L Last, Ashley Shade

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Review
  3. Metal-Phenolic Complexation Governs Soil Mineral Crystallinity to Enhance Crop Growth.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
    Article
  4. Review
  5. Review
  6. Article
  7. Plant influence shapesMicrobiology spectrum · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Drivers of rhizosphere bacterial communities inFrontiers in microbiology · 2026
    Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. A stable 15-member bacterial SynCom promotesFrontiers in microbiology · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sreejata BandopadhyayDepartment of Microbiology, Genetics, and Immunology, Michigan State University, East Lansing, MI, USA.ORCID 0000-0002-4694-2461
Xingxing LiU.S. Department of Energy Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI, USA.ORCID 0000-0002-7725-0329
Alan W BowsherDepartment of Microbiology, Genetics, and Immunology, Michigan State University, East Lansing, MI, USA.
Robert L LastU.S. Department of Energy Great Lakes Bioenergy Research Center, Michigan State University, East Lansing, MI, USA.ORCID 0000-0001-6974-9587
Ashley ShadeUniversite Claude Bernard Lyon 1, CNRS, INRAE, VetAgro Sup, Laboratoire d'Ecologie Microbienne LEM, CNRS UMR5557, INRAE UMR1418, Villeurbanne, F-69100, France. ashley.shade@cnrs.fr.ORCID 0000-0002-7189-3067

Funding

National Science Foundation (NSF) 1817377National Science Foundation (NSF) 1832042United States Department of Agriculture | National Institute of Food and Agriculture (NIFA) AgBioResearchU.S. Department of Energy (DOE) DE-SC0018409
6 · The paper itself

Abstract

Mitigating the effects of climate stress on crops is important for global food security. The microbiome associated with plant roots, the rhizobiome, can harbor beneficial microbes that alleviate stress, but the factors influencing their recruitment are unclear. We conducted a greenhouse experiment using field soil with a legacy of growing switchgrass and common bean to investigate the impact of short-term drought severity on the recruitment of active bacterial rhizobiome members. We applied 16S rRNA and 16S rRNA gene sequencing for both crops and metabolite profiling for switchgrass. We included planted and unplanted conditions to distinguish environment- versus plant-mediated rhizobiome drivers. Differences in community structure were observed between crops and between drought and watered and planted and unplanted treatments within crops. Despite crop-specific communities, drought rhizobiome dynamics were similar across the two crops. The presence of a plant more strongly explained the rhizobiome variation in bean (17%) than in switchgrass (3%), with a small effect of plant mediation during drought observed only for the bean rhizobiome. The switchgrass rhizobiome was stable despite changes in rhizosphere metabolite profiles between planted and unplanted treatments. We conclude that rhizobiome responses to short-term drought are crop-specific, with possible decoupling of plant exudation from rhizobiome responses.

Indexed as

BacteriaDroughtsMicrobiotaPanicumPlant RootsRhizosphereRNA, Ribosomal, 16SSoil MicrobiologyCrops, AgriculturalPhaseolusSoilRNA, Ribosomal, 16SSoil

Identifiers

PMID39068162
PMCPMC11283566

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.