Evidence map›Paper›PMID 39066280›Full record

ArticleViruses2024

Interrogating Genomes and Geography to Unravel Multiyear Vesicular Stomatitis Epizootics.

John M Humphreys, Phillip T Shults, Lauro Velazquez-Salinas, Miranda R Bertram, Angela M Pelzel-McCluskey, Steven J Pauszek, Debra P C Peters, Luis L Rodriguez

Abstract read
In one paragraph

Article in Viruses, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

John M HumphreysForeign Animal Disease Research Unit, Agricultural Research Service, U.S. Department of Agriculture, Plum Island Animal Disease Center (PIADC) and National Bio Agro Defense Facility (NBAF), Manhattan Kansas, KS 66502, USA.ORCID 0000-0002-8464-0886
Phillip T ShultsArthropod-Borne Animal Disease Research Unit, Agricultural Research Service, U.S. Department of Agriculture, Manhattan, KS 66502, USA.ORCID 0000-0003-2498-9637
Lauro Velazquez-SalinasForeign Animal Disease Research Unit, Agricultural Research Service, U.S. Department of Agriculture, Plum Island Animal Disease Center (PIADC) and National Bio Agro Defense Facility (NBAF), Manhattan Kansas, KS 66502, USA.ORCID 0000-0001-5550-8694
Miranda R BertramForeign Animal Disease Research Unit, Agricultural Research Service, U.S. Department of Agriculture, Plum Island Animal Disease Center (PIADC) and National Bio Agro Defense Facility (NBAF), Manhattan Kansas, KS 66502, USA.ORCID 0000-0003-3321-960X
Angela M Pelzel-McCluskeyVeterinary Services, Animal and Plant Health Inspection Service (APHIS), U.S. Department of Agriculture, Fort Collins, CO 80526, USA.ORCID 0000-0001-8169-2069
Steven J PauszekForeign Animal Disease Diagnostic Laboratory, National Veterinary Services Laboratories, Animal and Plant Health Inspection Service (APHIS), Plum Island Animal Disease Center (PIADC), U.S. Department of Agriculture, Orient, NY 11957, USA.ORCID 0000-0001-6329-5502
Debra P C PetersOffice of National Programs, Agricultural Research Service, U.S. Department of Agriculture, Beltsville, MD 20705, USA.ORCID 0000-0002-5842-8099
Luis L RodriguezForeign Animal Disease Research Unit, Agricultural Research Service, U.S. Department of Agriculture, Plum Island Animal Disease Center (PIADC) and National Bio Agro Defense Facility (NBAF), Manhattan Kansas, KS 66502, USA.ORCID 0000-0001-9270-8900

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We conducted an integrative analysis to elucidate the spatial epidemiological patterns of the Vesicular Stomatitis New Jersey virus (VSNJV) during the 2014-15 epizootic cycle in the United States (US). Using georeferenced VSNJV genomics data, confirmed vesicular stomatitis (VS) disease cases from surveillance, and a suite of environmental factors, our study assessed environmental and phylogenetic similarity to compare VS cases reported in 2014 and 2015. Despite uncertainties from incomplete virus sampling and cross-scale spatial processes, patterns suggested multiple independent re-invasion events concurrent with potential viral overwintering between sequential seasons. Our findings pointed to a geographically defined southern virus pool at the US-Mexico interface as the source of VSNJV invasions and overwintering sites. Phylodynamic analysis demonstrated an increase in virus diversity before a rise in case numbers and a pronounced reduction in virus diversity during the winter season, indicative of a genetic bottleneck and a significant narrowing of virus variation between the summer outbreak seasons. Environment-vector interactions underscored the central role of meta-population dynamics in driving disease spread. These insights emphasize the necessity for location- and time-specific management practices, including rapid response, movement restrictions, vector control, and other targeted interventions.

Indexed as

Disease OutbreaksGenome, ViralPhylogenySeasonsVesicular StomatitisVesicular stomatitis New Jersey virusAnimalsCattleCattle DiseasesGenetic VariationGenomicsGeographyUnited Stateslivestockphylogeneticsspatial epidemiologyvector-borne diseasesvesicular stomatitis

Identifiers

PMID39066280
PMCPMC11281362

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.