Evidence map›Paper›PMID 39066182›Full record

ArticleViruses2024

Re-Emergence of Rift Valley Fever Virus Lineage H in Senegal in 2022: In Vitro Characterization and Impact on Its Global Emergence in West Africa.

Ousseynou Sene, Samba Niang Sagne, Ndeye Sakha Bob, Moundhir Mhamadi, Idrissa Dieng, Aboubacry Gaye, Haoua Ba, Moussa Dia, Elisabeth Thérèse Faye, Sokhna Mayemouna Diop and 16 more

Abstract read
In one paragraph

Article in Viruses, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

26 authors.

Ousseynou SeneWHO Collaborating Centre for Arbovirus and Viral Hemorrhagic Fevers, Virology Department, Pasteur Institute, Dakar 12900, Senegal.ORCID 0000-0002-9047-6330
Samba Niang SagneEpidemiology, Clinical Research & Data Science, Pasteur Institute, Dakar 12900, Senegal.
Ndeye Sakha BobWHO Collaborating Centre for Arbovirus and Viral Hemorrhagic Fevers, Virology Department, Pasteur Institute, Dakar 12900, Senegal.
Moundhir MhamadiDIATROPIX, Pasteur Institute, Dakar 12900, Senegal.
Idrissa DiengWHO Collaborating Centre for Arbovirus and Viral Hemorrhagic Fevers, Virology Department, Pasteur Institute, Dakar 12900, Senegal.ORCID 0000-0002-8584-5592
Aboubacry GayeEpidemiology, Clinical Research & Data Science, Pasteur Institute, Dakar 12900, Senegal.ORCID 0000-0002-8550-7737
Haoua BaWHO Collaborating Centre for Arbovirus and Viral Hemorrhagic Fevers, Virology Department, Pasteur Institute, Dakar 12900, Senegal.
Moussa DiaWHO Collaborating Centre for Arbovirus and Viral Hemorrhagic Fevers, Virology Department, Pasteur Institute, Dakar 12900, Senegal.ORCID 0009-0008-9911-0176
Elisabeth Thérèse FayeWHO Collaborating Centre for Arbovirus and Viral Hemorrhagic Fevers, Virology Department, Pasteur Institute, Dakar 12900, Senegal.ORCID 0009-0004-7271-2960
Sokhna Mayemouna DiopWHO Collaborating Centre for Arbovirus and Viral Hemorrhagic Fevers, Virology Department, Pasteur Institute, Dakar 12900, Senegal.
Yoro SallMinistry of Health, Dakar 10700, Senegal.
Boly DiopMinistry of Health, Dakar 10700, Senegal.ORCID 0000-0001-5950-2628
Mamadou NdiayeMinistry of Health, Dakar 10700, Senegal.
Cheikh LoucoubarEpidemiology, Clinical Research & Data Science, Pasteur Institute, Dakar 12900, Senegal.ORCID 0000-0002-9582-4197
Etienne Simon-LorièreG5 Evolutionary Genomics of RNA Viruses, Pasteur Institute, 75015 Paris, France.ORCID 0000-0001-8420-7743
Anavaj SakuntabhaiFunctional Genetics of Infectious Disease Unit, Pasteur Institute, 75015 Paris, France.
Ousmane FayeWHO Collaborating Centre for Arbovirus and Viral Hemorrhagic Fevers, Virology Department, Pasteur Institute, Dakar 12900, Senegal.
Amadou Alpha SallWHO Collaborating Centre for Arbovirus and Viral Hemorrhagic Fevers, Virology Department, Pasteur Institute, Dakar 12900, Senegal.
Diawo DialloZoology Department, Pasteur Institute, Dakar 12900, Senegal.ORCID 0000-0002-7478-5248
Ndongo DiaWHO Collaborating Centre for Arbovirus and Viral Hemorrhagic Fevers, Virology Department, Pasteur Institute, Dakar 12900, Senegal.
Oumar FayeWHO Collaborating Centre for Arbovirus and Viral Hemorrhagic Fevers, Virology Department, Pasteur Institute, Dakar 12900, Senegal.ORCID 0000-0002-3478-1322
Moussa Moise DiagneWHO Collaborating Centre for Arbovirus and Viral Hemorrhagic Fevers, Virology Department, Pasteur Institute, Dakar 12900, Senegal.ORCID 0000-0001-5461-5623
Malick FallAnimal Biology Department, Faculty of Sciences and Techniques, Cheikh Anta Diop University, Dakar 10700, Senegal.
Marie Henriette Dior NdioneWHO Collaborating Centre for Arbovirus and Viral Hemorrhagic Fevers, Virology Department, Pasteur Institute, Dakar 12900, Senegal.ORCID 0000-0002-5613-4521
Mamadou Aliou BarryEpidemiology, Clinical Research & Data Science, Pasteur Institute, Dakar 12900, Senegal.
Gamou FallWHO Collaborating Centre for Arbovirus and Viral Hemorrhagic Fevers, Virology Department, Pasteur Institute, Dakar 12900, Senegal.ORCID 0000-0001-5035-1325

Funding

Inter-regional study of transmission, adaptation and pathogenesis of viruses with pandemic potential in Southeast Asia and West/Central AfricaU01AI151758 · NIAID · INSTITUT PASTEUR · PI SAKUNTABHAI, ANAVAJ, SIMON-LORIERE, ETIENNE · 2020 to 2024
$6.7M
Africa CDC Pathogen Genomics Initiative 4306-22-EIPHLSS-GENOMICSAutism Speaks AS2021Institut Pasteur de Dakar (WHO CC) noNIAID NIH HHS U01 AI151758NIH HHS 3-IPD-NIH-U01-AS-2021Senegalese Ministry of Health no
6 · The paper itself

Abstract

Rift Valley fever (RVF) is a re-emerging vector-borne zoonosis with a high public health and veterinary impact. In West Africa, many lineages were previously detected, but since 2020, lineage H from South Africa has been the main cause of the outbreaks. In this study, clinical samples collected through national surveillance were screened for RVF virus (RVFV) acute infection by RT-PCR and IgM ELISA tests. Sequencing, genome mapping and in vitro phenotypic characterization in mammal cells were performed on RT-PCR positive samples in comparison with other epidemic lineages (G and C). Four RVFV human cases were detected in Senegal and the sequence analyses revealed that the strains belonged to lineage H. The in vitro kinetics and genome mapping showed different replication efficiency profiles for the tested RVFV lineages and non-conservative mutations, which were more common to lineage G or specific to lineage H. Our findings showed the re-emergence of lineage H in Senegal in 2022, its high viral replication efficiency in vitro and support the findings that genetic diversity affects viral replication. This study gives new insights into the biological properties of lineage H and calls for deeper studies to better assess its potential to cause a future threat in Senegal.

Indexed as

Genome, ViralPhylogenyRift Valley FeverRift Valley fever virusVirus ReplicationAfrica, WesternAnimalsCommunicable Diseases, EmergingDisease OutbreaksGenetic VariationHumansMutationSenegal2022in vitro characterizationlineage Hre-emergenceRift Valley feverSenegal

Identifiers

PMID39066182
PMCPMC11281490

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.