Evidence map›Paper›PMID 39065438›Full record

ArticlePlants (Basel, Switzerland)2024

Integrated Transcriptomic and Proteomic Analysis Reveals Molecular Mechanisms of the Cold Stress Response during the Overwintering Period in Blueberries (

Xin Wei, Hongguang Wang, Dan Guo, Baisong Wang, Xiao Zhang, Jian Wang, Youchun Liu, Xingdong Wang, Cheng Liu, Wenxuan Dong

Abstract read
In one paragraph

Article in Plants (Basel, Switzerland), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Xin WeiCollege of Horticulture, Shenyang Agricultural University, Shenyang 110866, China.
Hongguang WangLiaoning Institute of Pomology, Yingkou 115009, China.
Dan GuoLiaoning Institute of Pomology, Yingkou 115009, China.
Baisong WangLiaoning Institute of Pomology, Yingkou 115009, China.
Xiao ZhangCollege of Horticulture, Shenyang Agricultural University, Shenyang 110866, China.ORCID 0000-0002-1679-5392
Jian WangCollege of Horticulture, Shenyang Agricultural University, Shenyang 110866, China.
Youchun LiuLiaoning Institute of Pomology, Yingkou 115009, China.
Xingdong WangLiaoning Institute of Pomology, Yingkou 115009, China.
Cheng LiuLiaoning Institute of Pomology, Yingkou 115009, China.
Wenxuan DongCollege of Horticulture, Shenyang Agricultural University, Shenyang 110866, China.

Funding

China Agriculture Research System of MOF and MARA CARS-29Liaoning Provincial Department of Science and Technology 2020JH2/10500005Liaoning Provincial Department of Science and Technology 2021JH1/10400036
6 · The paper itself

Abstract

In China, the Liaodong Peninsula is an important growing area for blueberries because of the high organic matter content in the soil, the abundance of light, and the large temperature difference between day and night. However, the low temperature and relative humidity of the air during the winter and early spring in the Liaodong Peninsula are the main reasons for the damage to blueberry plants. Here, we documented the transcriptome and proteome dynamics in response to cold stress in three blueberry cultivars ('Northland', 'Bluecrop', and 'Berkeley'). Functional enrichment analysis indicated that many differentially expressed genes (DEGs) and differentially abundant proteins (DAPs) were mainly involved in the pathways of protein processing in the endoplasmic reticulum, the glutathione metabolism pathway, and ribosomes. We identified 12,747 transcription factors (TFs) distributed in 20 families. Based on our findings, we speculated that cold tolerance development was caused by the expression of calcium-related genes (CDPKs and CMLs), glutathione proteins, and TFs (NAC, WRKY, and ERF). Our investigation found that three cultivars experienced cold damage when exposed to temperatures between -9 °C and -15 °C in the field. Therefore, the cold resistance of blueberries during overwintering should not only resist the influence of low temperatures but also complex environmental factors such as strong winds and low relative humidity in the air. The order of cold resistance strength in the three blueberry cultivars was 'Berkeley', 'Bluecrop', and 'Northland'. These results provide a comprehensive profile of the response to cold stress, which has the potential to be used as a selection marker for programs to improve cold tolerance in blueberries.

Indexed as

blueberrycold toleranceproteomeregulatory networktranscriptome

Identifiers

PMID39065438
PMCPMC11280072

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.