Evidence map›Paper›PMID 39062624›Full record

ArticleGenes2024

Genomic Regions Associated with Resistance to Gastrointestinal Parasites in Australian Merino Sheep.

Brenda Vera, Elly A Navajas, Pablo Peraza, Beatriz Carracelas, Elize Van Lier, Gabriel Ciappesoni

Abstract read
In one paragraph

Article in Genes, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Brenda VeraSistema Ganadero Extensivo, INIA Las Brujas, Canelones 90200, Uruguay.ORCID 0000-0001-8200-4117
Elly A NavajasSistema Ganadero Extensivo, INIA Las Brujas, Canelones 90200, Uruguay.
Pablo PerazaSistema Ganadero Extensivo, INIA Las Brujas, Canelones 90200, Uruguay.
Beatriz CarracelasSistema Ganadero Extensivo, INIA Las Brujas, Canelones 90200, Uruguay.ORCID 0000-0003-1340-367X
Elize Van LierDepartamento de Producción Animal y Pasturas, Facultad de Agronomía, Universidad de la República, Avda. Garzón 780, Montevideo 12900, Uruguay.ORCID 0000-0002-1510-0456
Gabriel CiappesoniSistema Ganadero Extensivo, INIA Las Brujas, Canelones 90200, Uruguay.ORCID 0000-0002-0091-3956

Funding

Comisión Sectorial de Investigación Científica, CSIC, Universidad de la República CSIC_I+D_2018_287European Union's Horizon 2020 research and innovation program SMARTER, agreement no. 772787Instituto Nacional de Investigación Agropecuaria INIA_CL_40 and INIA_CL_38
6 · The paper itself

Abstract

The objective of this study was to identify genomic regions and genes associated with resistance to gastrointestinal nematodes in Australian Merino sheep in Uruguay, using the single-step GWAS methodology (ssGWAS), which is based on genomic estimated breeding values (GEBVs) obtained from a combination of pedigree, genomic, and phenotypic data. This methodology converts GEBVs into SNP effects. The analysis included 26,638 animals with fecal egg count (FEC) records obtained in two independent parasitic cycles (FEC1 and FEC2) and 1700 50K SNP genotypes. The comparison of genomic regions was based on genetic variances (gVar(%)) explained by non-overlapping regions of 20 SNPs. For FEC1 and FEC2, 18 and 22 genomic windows exceeded the significance threshold (gVar(%) ≥ 0.22%), respectively. The genomic regions with strong associations with FEC1 were located on chromosomes OAR 2, 6, 11, 21, and 25, and for FEC2 on OAR 5, 6, and 11. The proportion of genetic variance attributed to the top windows was 0.83% and 1.9% for FEC1 and FEC2, respectively. The 33 candidate genes shared between the two traits were subjected to enrichment analysis, revealing a marked enrichment in biological processes related to immune system functions. These results contribute to the understanding of the genetics underlying gastrointestinal parasite resistance and its implications for other productive and welfare traits in animal breeding programs.

Indexed as

Polymorphism, Single NucleotideSheep DiseasesAnimalsAustraliaDisease ResistanceGenome-Wide Association StudyIntestinal Diseases, ParasiticNematode InfectionsParasite Egg CountSheepHaemonchus contortusnematodesOvis ariesssGBLUPssGWAS

Identifiers

PMID39062624
PMCPMC11276604

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.