Evidence map›Paper›PMID 39062134›Full record

ArticleBiomedicines2024

Molecular Characterization of Hepatitis B Virus in People Living with HIV in Rural and Peri-Urban Communities in Botswana.

Bonolo B Phinius, Wonderful T Choga, Motswedi Anderson, Margaret Mokomane, Irene Gobe, Tsholofelo Ratsoma, Basetsana Phakedi, Gorata Mpebe, Lynnette Bhebhe, Tendani Gaolathe and 7 more

Abstract read
In one paragraph

Article in Biomedicines, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Bonolo B PhiniusBotswana Harvard Health Partnership, Gaborone Private Bag BO320, Botswana.ORCID 0000-0002-0180-2705
Wonderful T ChogaBotswana Harvard Health Partnership, Gaborone Private Bag BO320, Botswana.ORCID 0000-0001-7606-0569
Motswedi AndersonBotswana Harvard Health Partnership, Gaborone Private Bag BO320, Botswana.ORCID 0000-0001-9974-9684
Margaret MokomaneSchool of Allied Health Professions, Faculty of Health Sciences, University of Botswana, Gaborone Private Bag UB0022, Botswana.
Irene GobeSchool of Allied Health Professions, Faculty of Health Sciences, University of Botswana, Gaborone Private Bag UB0022, Botswana.ORCID 0000-0003-3679-6509
Tsholofelo RatsomaBotswana Harvard Health Partnership, Gaborone Private Bag BO320, Botswana.
Basetsana PhakediBotswana Harvard Health Partnership, Gaborone Private Bag BO320, Botswana.
Gorata MpebeBotswana Harvard Health Partnership, Gaborone Private Bag BO320, Botswana.
Lynnette BhebheBotswana Harvard Health Partnership, Gaborone Private Bag BO320, Botswana.ORCID 0000-0003-0282-0793
Tendani GaolatheBotswana Harvard Health Partnership, Gaborone Private Bag BO320, Botswana.
Mosepele MosepeleBotswana Harvard Health Partnership, Gaborone Private Bag BO320, Botswana.
Joseph MakhemaBotswana Harvard Health Partnership, Gaborone Private Bag BO320, Botswana.
Roger ShapiroBotswana Harvard Health Partnership, Gaborone Private Bag BO320, Botswana.
Shahin LockmanBotswana Harvard Health Partnership, Gaborone Private Bag BO320, Botswana.
Rosemary MusondaBotswana Harvard Health Partnership, Gaborone Private Bag BO320, Botswana.
Sikhulile MoyoBotswana Harvard Health Partnership, Gaborone Private Bag BO320, Botswana.ORCID 0000-0003-3821-4592
Simani GaseitsiweBotswana Harvard Health Partnership, Gaborone Private Bag BO320, Botswana.

Funding

H3ABioNet: a sustainable African Bioinformatics Network for H3AfricaU41HG006941 · NHGRI · UNIVERSITY OF CAPE TOWN · PI MULDER, NICOLA · 2012 to 2017
$14.8M
Training in HIV Genomics, Treatment, and Cure Research in BotswanaD43TW009610 · FIC · THE BOTSWANA HARVARD HEALTH PARTNERSHIP · PI SHAHIN LOCKMAN, Joseph Moeketsi Makhema · 2013 to 2026
$4.4M
Mentoring in Patient-Oriented HIV Research in the Era of Universal ARTK24AI131928 · NIAID · BRIGHAM AND WOMEN'S HOSPITAL · PI SHAHIN LOCKMAN · 2017 to 2026
$1.9M
Expansion of research and mentoring to improve birth outcomes and treatment outcomes among HIV-affected children in BotswanaK24AI131924 · NIAID · HARVARD UNIVERSITY D/B/A HARVARD SCHOOL OF PUBLIC HEALTH · PI Roger L Shapiro · 2018 to 2026
$1.6M
Viral Diversity an Innovative Biomarker for Refining Estimates of HIV IncidenceK43TW012350 · FIC · THE BOTSWANA HARVARD HEALTH PARTNERSHIP · PI Sikhulile Moyo · 2022 to 2026
$682k
Developing Botswana Laboratory Capacity in HIV Genomics and HIV CureG11TW012503 · FIC · THE BOTSWANA HARVARD HEALTH PARTNERSHIP · PI GASEITSIWE, SIMANI · 2023 to 2025
$297k
Bill & Melinda Gates Foundation INV-033558European & Developing Countries Clinical Trials Partnership CSA2020NoE-3104 TESAIIIFIC NIH HHS D43 TW009610FIC NIH HHS K43 TW012350NIH HHS 1G11TW012503NIH HHS D43 TW009610NIH HHS K24 AI131924NIH HHS K24 AI131928NIH HHS K43 TW012350NIH HHS U41HG006941Wellcome Trust 218770/Z/19/Z
6 · The paper itself

Abstract

(1) Background: Hepatitis B virus (HBV) sequencing data are important for monitoring HBV evolution. We aimed to molecularly characterize HBV sequences from participants with HBV surface antigen-positive (HBsAg+) serology and occult hepatitis B infection (OBI+). (2) Methods: We utilized archived plasma samples from people living with human immunodeficiency virus (PLWH) in Botswana. HBV DNA was sequenced, genotyped and analyzed for mutations. We compared mutations from study sequences to those from previously generated HBV sequences in Botswana. The impact of OBI-associated mutations on protein function was assessed using the Protein Variation Effect Analyzer. (3) Results: Sequencing success was higher in HBsAg+ than in OBI+ samples [86/128 (67.2%) vs. 21/71 (29.2%)]. Overall, 93.5% (100/107) of sequences were genotype A1, 2.8% (3/107) were D3 and 3.7% (4/107) were E. We identified 13 escape mutations in 18/90 (20%) sequences with HBsAg coverage, with K122R having the highest frequency. The mutational profile of current sequences differed from previous Botswana HBV sequences, suggesting possible mutational changes over time. Mutations deemed to have an impact on protein function were

Indexed as

AfricaBotswanaescape mutationsgenotypeshepatitis B virusoccult hepatitis B

Identifiers

PMID39062134
PMCPMC11275055

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.