Evidence map›Paper›PMID 39060557›Full record

ArticleCurrent microbiology2024

Community Composition and Functional Characterization of Microorganisms in Surface Sediment of the New Britain Trench.

Lin Hu, Zhixuan Wang, Zixuan Wang, Li Wang, Jiasong Fang, Rulong Liu

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Article in Current microbiology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Lin Hu *College of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai, China.
Zhixuan Wang *College of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai, China.
Zixuan WangTidal Flat Research Center of Jiangsu Province, Nanjing, Jiangsu, China.
Li WangCollege of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai, China.
Jiasong FangCollege of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai, China.
Rulong LiuCollege of Oceanography and Ecological Science, Shanghai Ocean University, Shanghai, China. rlliu@shou.edu.cn.

Funding

National Natural Science Foundation of China 42276149National Natural Science Foundation of China 92251303
6 · The paper itself

Abstract

The deep-sea harbors abundant prokaryotic biomass is a major site of organic carbon remineralization and long-term carbon burial in the ocean. Deep-sea trenches are the deepest part of the ocean, and their special geological and morphological features promoting the accumulation of organic matter and active organic carbon turnover. Despite the expanding reports about the organic matter inputs, limited information is known regarding microbial processes in deep-sea trenches. In this study, we investigated the species composition and metabolic potential in surface sediment of the New Britain Trench (NBT), using a metagenomic approach. The predominant microbial taxa in NBT sediment include Proteobacteria, Acidobacteria, Planctomycetes, Actinobacteria and Chloroflexota. The microbial communities showed highly diverse metabolic potentials. Particularly, genes encoding enzymes for degradation of aromatic compounds, as well as those encoding haloalkane dehalogenase and haloacetate dehalogenase were annotated in the NBT surface sediment, which indicate the potential of microorganisms to degrade different types of refractory organic matter. The functional genes encoding enzymes for dissimilatory nitrate reduction, denitrification, and nitrification were also represented in the NBT metagenome. Overall, the microbial communities show high diversity of heterotrophic lineages and metabolic features, supporting their potential contributions in organic carbon metabolism. Meanwhile, Nitrosopumilus, a dominant genus in the surface sediment of the NBT, is a typical ammonia-oxidizing archaea (AOA), with autotrophic CO

Indexed as

BacteriaGeologic SedimentsArchaeaBiodiversityCarbonMetagenomeMetagenomicsMicrobiotaPhylogenyRNA, Ribosomal, 16SSeawaterCarbonRNA, Ribosomal, 16S

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.