Evidence map›Paper›PMID 39060302›Full record

ArticleScientific reports2024

Functional evaluation of germline TP53 variants identified in Brazilian families at-risk for Li-Fraumeni syndrome.

Renata B V Abreu, Ariane S Pereira, Marcela N Rosa, Patricia Ashton-Prolla, Viviane A O Silva, Matias E Melendez, Edenir I Palmero

Abstract read
In one paragraph

Article in Scientific reports, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Renata B V AbreuMolecular Oncology Research Center, Barretos Cancer Hospital, Barretos, São Paulo, Brazil.
Ariane S PereiraMolecular Oncology Research Center, Barretos Cancer Hospital, Barretos, São Paulo, Brazil.
Marcela N RosaMolecular Oncology Research Center, Barretos Cancer Hospital, Barretos, São Paulo, Brazil.
Patricia Ashton-ProllaExperimental Research Center, Hospital de Clínicas de Porto Alegre, Porto Alegre, Rio Grande do Sul, Brazil.
Viviane A O SilvaMolecular Oncology Research Center, Barretos Cancer Hospital, Barretos, São Paulo, Brazil.
Matias E MelendezMolecular Oncology Research Center, Barretos Cancer Hospital, Barretos, São Paulo, Brazil.
Edenir I PalmeroMolecular Oncology Research Center, Barretos Cancer Hospital, Barretos, São Paulo, Brazil. edenirip@yahoo.com.br.

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico Productivity FellowshipsFundação de Amparo à Pesquisa do Estado de São Paulo 2018/25118-8Ministério da Saúde 25000.056766/2015-64
6 · The paper itself

Abstract

Germline TP53 pathogenic variants can lead to a cancer susceptibility syndrome known as Li-Fraumeni (LFS). Variants affecting its activity can drive tumorigenesis altering p53 pathways and their identification is crucial for assessing individual risk. This study explored the functional impact of TP53 missense variants on its transcription factor activity. We selected seven TP53 missense variants (c.129G > C, c.320A > G, c.417G > T, c.460G > A, c,522G > T, c.589G > A and c.997C > T) identified in Brazilian families at-risk for LFS. Variants were created through site-directed mutagenesis and transfected into SK-OV-3 cells to assess their transcription activation capabilities. Variants K139N and V197M displayed significantly reduced transactivation activity in a TP53-dependent luciferase reporter assay. Additionally, K139N negatively impacted CDKN1A and MDM2 expression and had a limited effect on GADD45A and PMAIP1 upon irradiation-induced DNA damage. Variant V197M demonstrated functional impact in all target genes evaluated and loss of Ser15 phosphorylation. K139N and V197M variants presented a reduction of p21 levels after irradiation. Our data show that K139N and V197M negatively impact p53 functions, supporting their classification as pathogenic variants. This underscores the significance of conducting functional studies on germline TP53 missense variants classified as variants of uncertain significance to ensure proper management of LFS-related cancer risks.

Indexed as

Genetic Predisposition to DiseaseGerm-Line MutationLi-Fraumeni SyndromeMutation, MissenseTumor Suppressor Protein p53BrazilCell Cycle ProteinsCell Line, TumorCyclin-Dependent Kinase Inhibitor p21FemaleGADD45 ProteinsHumansMaleProto-Oncogene Proteins c-mdm2Transcriptional ActivationCDKN1A protein, humanCell Cycle ProteinsCyclin-Dependent Kinase Inhibitor p21GADD45A protein, humanGADD45 ProteinsMDM2 protein, humanProto-Oncogene Proteins c-mdm2TP53 protein, humanTumor Suppressor Protein p53DNA repairFunctional analysisLi–Fraumeni syndromeTP53Transcription factorVariants of uncertain significance

Identifiers

PMID39060302
PMCPMC11282216

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.