Evidence map›Paper›PMID 39058903›Full record

ArticleBioEssays : news and reviews in molecular, cellular and developmental biology2024

The yin and yang of pioneer transcription factors: Dual roles in repression and activation.

Takeshi Katsuda, Jonathan H Sussman, Kenneth S Zaret, Ben Z Stanger

Abstract read
In one paragraph

Article in BioEssays : news and reviews in molecular, cellular and developmental biology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Takeshi KatsudaPerelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Jonathan H SussmanPerelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Kenneth S ZaretPerelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.
Ben Z StangerPerelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.ORCID https://orcid.org/0000-0003-0410-4037

Funding

Mechanisms of bile duct reprogrammingR01DK083355 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI GROMPE, MARKUS, STANGER, BEN Z · 2009 to 2020
$4.3M
Transcription Factors Overcoming Chromatin Barriers to Control Cell FateR35GM153180 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI Kenneth Zaret · 2024 to 2026
$2.2M
Modulating heterochromatin to improve beta cell differentiation from stem cellsR01DK125387 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI ZARET, KENNETH · 2020 to 2024
$2.0M
Abramson Family Cancer Research InstituteCholangiocarcinoma FoundationFred and Suzanne Biesecker Pediatric Liver CenterNIDDK NIH HHS R01 DK083355NIDDK NIH HHS R01DK083355NIDDK NIH HHS R01 DK125387NIDDK NIH HHS R01DK125387NIGMS NIH HHS R35 GM153180NIH HHS R01DK083355NIH HHS R01DK125387
6 · The paper itself

Abstract

Pioneer transcription factors, by virtue of their ability to target nucleosomal DNA in silent chromatin, play crucial roles in eliciting cell fate decisions during development and cellular reprogramming. In addition to their well-established role in chromatin opening to activate gene expression programs, recent studies have demonstrated that pioneer factors have the complementary function of being able to silence the starting cell identity through targeted chromatin repression. Given recent discoveries regarding the repressive aspect of pioneer function, we discuss the basis by which pioneer factors can suppress alternative lineage programs in the context of cell fate control.

Indexed as

ChromatinTranscription FactorsAnimalsCell DifferentiationCell LineageHumansNucleosomesChromatinNucleosomesTranscription Factorschromatingene activationgene repressionPioneer factorstranscription factors

Identifiers

PMID39058903
PMCPMC11427146

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.