Evidence map›Paper›PMID 39058762›Full record

ArticleScience immunology2024

Sterile production of interferons in the thymus affects T cell repertoire selection.

K Maude Ashby, Matouš Vobořil, Oscar C Salgado, S Thera Lee, Ryan J Martinez, Christine H O'Connor, Elise R Breed, Shuya Xuan, Charles R Roll, Saumith Bachigari and 4 more

Abstract read
In one paragraph

Article in Science immunology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Thymic Dendritic Cells Revisited.Immunological reviews · 2025
    Review
  17. Unexpected heterogeneity and tissue-specific properties of the thymic hematopoietic antigen-presenting cell network.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors.

K Maude AshbyCenter for Immunology, Department of Lab Medicine and Pathology, University of Minnesota Medical School, Minneapolis, MN 55455, USA.ORCID 0000-0002-6297-5941
Matouš VobořilCenter for Immunology, Department of Lab Medicine and Pathology, University of Minnesota Medical School, Minneapolis, MN 55455, USA.ORCID 0000-0002-3672-7629
Oscar C SalgadoCenter for Immunology, Department of Lab Medicine and Pathology, University of Minnesota Medical School, Minneapolis, MN 55455, USA.ORCID 0000-0002-9363-8649
S Thera LeeCenter for Immunology, Department of Lab Medicine and Pathology, University of Minnesota Medical School, Minneapolis, MN 55455, USA.
Ryan J MartinezCenter for Immunology, Department of Lab Medicine and Pathology, University of Minnesota Medical School, Minneapolis, MN 55455, USA.ORCID 0000-0002-2045-8794
Christine H O'ConnorResearch Informatics Solutions, Laboratory Medicine and Pathology Group, Minnesota Supercomputing Institute, Minneapolis, MN 55455, USA.
Elise R BreedCenter for Immunology, Department of Lab Medicine and Pathology, University of Minnesota Medical School, Minneapolis, MN 55455, USA.ORCID 0000-0001-6468-8463
Shuya XuanCenter for Immunology, Department of Lab Medicine and Pathology, University of Minnesota Medical School, Minneapolis, MN 55455, USA.ORCID 0000-0002-5869-8785
Charles R RollCenter for Immunology, Department of Lab Medicine and Pathology, University of Minnesota Medical School, Minneapolis, MN 55455, USA.ORCID 0000-0002-0726-2076
Saumith BachigariCenter for Immunology, Department of Lab Medicine and Pathology, University of Minnesota Medical School, Minneapolis, MN 55455, USA.
Hattie HeilandCenter for Immunology, Department of Lab Medicine and Pathology, University of Minnesota Medical School, Minneapolis, MN 55455, USA.
Daniel B StetsonDepartment of Immunology, University of Washington School of Medicine, Seattle, WA 98109, USA.ORCID 0000-0002-5936-1113
Sergei V KotenkoDepartment of Microbiology, Biochemistry, and Molecular Genetics, Rutgers New Jersey Medical School, Newark, NJ 07103, USA.ORCID 0000-0001-5694-878X
Kristin A HogquistCenter for Immunology, Department of Lab Medicine and Pathology, University of Minnesota Medical School, Minneapolis, MN 55455, USA.ORCID 0000-0001-9963-5687

Funding

Type I interferons in tolerance in the steady stateP01AI035296 · NIAID · UNIVERSITY OF MINNESOTA TWIN CITIES · PI JAMESON, STEPHEN C · 1993 to 2023
$31.1M
Intracellular nucleic acid detection in autoimmunityR01AI084914 · NIAID · UNIVERSITY OF WASHINGTON · PI STETSON, DANIEL B · 2010 to 2024
$7.2M
IMMUNOLOGY TRAINING PROGRAMT32AI007313 · NIAID · UNIVERSITY OF MINNESOTA TWIN CITIES · PI Carla Rothlin · 1989 to 2026
$5.7M
Peptide induction of positive selectionR01AI039560 · NIAID · UNIVERSITY OF MINNESOTA TWIN CITIES · PI HOGQUIST, KRISTIN A. · 2001 to 2010
$3.1M
TCR signaling in thymic selection: Role of innate immune activationR01AI179749 · NIAID · UNIVERSITY OF MINNESOTA · PI Kristin A. Hogquist · 2024 to 2026
$1.9M
Stem Cell Biology Training ProgramT32GM113846 · NIGMS · UNIVERSITY OF MINNESOTA · PI PERLINGEIRO, RITA C. R. · 2015 to 2019
$712k
Role of thymic B cells in immune toleranceK99AI184587 · NIAID · UNIVERSITY OF MINNESOTA · PI MARTINEZ, RYAN J · 2024 to 2025
$276k
NIAID NIH HHS K99 AI184587NIAID NIH HHS P01 AI035296NIAID NIH HHS R01 AI039560NIAID NIH HHS R01 AI084914NIAID NIH HHS R01 AI179749NIAID NIH HHS T32 AI007313NIGMS NIH HHS T32 GM113846
6 · The paper itself

Abstract

Type I and III interferons (IFNs) are robustly induced during infections and protect cells against viral infection. Both type I and III IFNs are also produced at low levels in the thymus at steady state; however, their role in T cell development and immune tolerance is unclear. Here, we found that both type I and III IFNs were constitutively produced by a very small number of AIRE

Indexed as

InterferonsMice, Inbred C57BLThymus GlandAnimalsMiceMice, KnockoutReceptors, Antigen, T-CellT-LymphocytesInterferonsReceptors, Antigen, T-Cell

Identifiers

PMID39058762
PMCPMC12052003

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.