Evidence map›Paper›PMID 39058349›Full record

ArticleJournal of periodontal & implant science2024

Highly accurate measurement of the relative abundance of oral pathogenic bacteria using colony-forming unit-based qPCR.

Jiyoung Hwang, Jeong-Hoo Lee, Yeon-Jin Kim, Inseong Hwang, Young-Youn Kim, Hye-Sung Kim, Do-Young Park

Abstract read
In one paragraph

Article in Journal of periodontal & implant science, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Fermented cassava peel withVeterinary world · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Jiyoung HwangR&D Center, DOCSMEDI OralBiome Co. Ltd., Goyang, Korea.ORCID https://orcid.org/0009-0002-9321-2821
Jeong-Hoo LeeR&D Center, DOCSMEDI OralBiome Co. Ltd., Goyang, Korea.ORCID https://orcid.org/0009-0008-5507-9381
Yeon-Jin KimR&D Center, DOCSMEDI OralBiome Co. Ltd., Goyang, Korea.ORCID https://orcid.org/0009-0009-8926-008X
Inseong HwangApple Tree Institute of Biomedical Science, Apple Tree Medical Foundation, Goyang, Korea.ORCID https://orcid.org/0000-0002-4973-6823
Young-Youn KimApple Tree Dental Hospital, Apple Tree Medical Foundation, Goyang, Korea.ORCID https://orcid.org/0000-0002-0299-8447
Hye-Sung KimApple Tree Dental Hospital, Apple Tree Medical Foundation, Goyang, Korea.ORCID https://orcid.org/0000-0003-1131-9992
Do-Young ParkR&D Center, DOCSMEDI OralBiome Co. Ltd., Goyang, Korea. pdy@docsmedi.kr.ORCID https://orcid.org/0000-0002-4170-4835

Funding

Korea Disease Control and Prevention Agency KBN4-A04-03
6 · The paper itself

Abstract

purposeQuantitative polymerase chain reaction (qPCR) has recently been employed to measure the number of bacterial cells by quantifying their DNA fragments. However, this method can yield inaccurate bacterial cell counts because the number of DNA fragments varies among different bacterial species. To resolve this issue, we developed a novel optimized qPCR method to quantify bacterial colony-forming units (CFUs), thereby ensuring a highly accurate count of bacterial cells.

methodsTo establish a new qPCR method for quantifying 6 oral bacteria namely,

resultsFor each bacterium, the selected primer-probe set amplified serial-diluted standard templates indicative of bacterial CFUs. The resultant Ct values and the corresponding bacterial CFU values were used to construct a standard curve, the linearity of which was determined by a coefficient of determination (

conclusionsThe CFU-based qPCR quantification method provides highly accurate and reliable quantitation of oral pathogenic bacteria.

Indexed as

Colony-forming unitOral pathogenic bacteriaQuantitative polymerase chain reactionRelative abundance

Identifiers

PMID39058349
PMCPMC11729247

What OpenQuestion holds

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LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.