Evidence map›Paper›PMID 39057719›Full record

ArticleMetabolites2024

A Multiomics, Molecular Atlas of Breast Cancer Survivors.

Brent A Bauer, Caleb M Schmidt, Kathryn J Ruddy, Janet E Olson, Cem Meydan, Julian C Schmidt, Sheena Y Smith, Fergus J Couch, John C Earls, Nathan D Price and 5 more

Abstract read
In one paragraph

Article in Metabolites, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Review
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Brent A BauerMayo Clinic, Rochester, MN 55905, USA.ORCID 0000-0003-3453-6906
Caleb M SchmidtSovaris Aerospace, Boulder, CO 80302, USA.
Kathryn J RuddyMayo Clinic, Rochester, MN 55905, USA.
Janet E OlsonMayo Clinic, Rochester, MN 55905, USA.
Cem MeydanThorne Research, Inc., Summerville, SC 29483, USA.
Julian C SchmidtSovaris Aerospace, Boulder, CO 80302, USA.
Sheena Y SmithThorne Research, Inc., Summerville, SC 29483, USA.
Fergus J CouchMayo Clinic, Rochester, MN 55905, USA.
John C EarlsThorne Research, Inc., Summerville, SC 29483, USA.
Nathan D PriceThorne Research, Inc., Summerville, SC 29483, USA.
Joel T DudleyThorne Research, Inc., Summerville, SC 29483, USA.ORCID 0000-0002-7036-6492
Christopher E MasonThorne Research, Inc., Summerville, SC 29483, USA.ORCID 0000-0002-1850-1642
Bodi ZhangThorne Research, Inc., Summerville, SC 29483, USA.
Stephen M PhippsThorne Research, Inc., Summerville, SC 29483, USA.
Michael A SchmidtSovaris Aerospace, Boulder, CO 80302, USA.ORCID 0000-0001-8765-5306

Funding

John P. and Carole E. Gregory Foundation n/a
6 · The paper itself

Abstract

Breast cancer imposes a significant burden globally. While the survival rate is steadily improving, much remains to be elucidated. This observational, single time point, multiomic study utilizing genomics, proteomics, targeted and untargeted metabolomics, and metagenomics in a breast cancer survivor (BCS) and age-matched healthy control cohort (N = 100) provides deep molecular phenotyping of breast cancer survivors. In this study, the BCS cohort had significantly higher polygenic risk scores for breast cancer than the control group. Carnitine and hexanoyl carnitine were significantly different. Several bile acid and fatty acid metabolites were significantly dissimilar, most notably the Omega-3 Index (O3I) (significantly lower in BCS). Proteomic and metagenomic analyses identified group and pathway differences, which warrant further investigation. The database built from this study contributes a wealth of data on breast cancer survivorship where there has been a paucity, affording the ability to identify patterns and novel insights that can drive new hypotheses and inform future research. Expansion of this database in the treatment-naïve, newly diagnosed, controlling for treatment confounders, and through the disease progression, can be leveraged to profile and contextualize breast cancer and breast cancer survivorship, potentially leading to the development of new strategies to combat this disease and improve the quality of life for its victims.

Indexed as

aptamerbreast cancerbreast cancer survivorsgenomicsmetabolomicsmetagenomicsmicrobiomemultiomicsomega-3 fatty acidsproteomics

Identifiers

PMID39057719
PMCPMC11279123

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.