Evidence map›Paper›PMID 39055054›Full record

ReviewFrontiers in endocrinology2024

Understanding testicular single cell transcriptional atlas: from developmental complications to male infertility.

Munichandra Babu Tirumalasetty, Indrashis Bhattacharya, Mohammad Sarif Mohiuddin, Vijaya Bhaskar Baki, Mayank Choubey

Abstract readReview
In one paragraph

Review in Frontiers in endocrinology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
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  4. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Munichandra Babu Tirumalasetty *Department of Foundations of Medicine, NYU Grossman Long Island School of Medicine, Mineola, NY, United States.
Indrashis Bhattacharya *Department of Zoology, School of Biological Sciences, Central University of Kerala, Kasargod, Kerala, India.
Mohammad Sarif MohiuddinDepartment of Foundations of Medicine, NYU Grossman Long Island School of Medicine, Mineola, NY, United States.
Vijaya Bhaskar BakiDivision of Biomedical Sciences, School of Medicine, University of California, Riverside, Riverside, CA, United States.
Mayank ChoubeyDepartment of Foundations of Medicine, NYU Grossman Long Island School of Medicine, Mineola, NY, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Spermatogenesis is a multi-step biological process where mitotically active diploid (2n) spermatogonia differentiate into haploid (n) spermatozoa via regulated meiotic programming. The alarming rise in male infertility has become a global concern during the past decade thereby demanding an extensive profiling of testicular gene expression. Advancements in Next-Generation Sequencing (NGS) technologies have revolutionized our empathy towards complex biological events including spermatogenesis. However, despite multiple attempts made in the past to reveal the testicular transcriptional signature(s) either with bulk tissues or at the single-cell, level, comprehensive reviews on testicular transcriptomics and associated disorders are limited. Notably, technologies explicating the genome-wide gene expression patterns during various stages of spermatogenic progression provide the dynamic molecular landscape of testicular transcription. Our review discusses the advantages of single-cell RNA-sequencing (Sc-RNA-seq) over bulk RNA-seq concerning testicular tissues. Additionally, we highlight the cellular heterogeneity, spatial transcriptomics, dynamic gene expression and cell-to-cell interactions with distinct cell populations within the testes including germ cells (Gc), Sertoli cells (Sc), Peritubular cells (PTc), Leydig cells (Lc), etc. Furthermore, we provide a summary of key finding of single-cell transcriptomic studies that have shed light on developmental mechanisms implicated in testicular disorders and male infertility. These insights emphasize the pivotal roles of Sc-RNA-seq in advancing our knowledge regarding testicular transcriptional landscape and may serve as a potential resource to formulate future clinical interventions for male reproductive health.

Indexed as

Infertility, MaleSingle-Cell AnalysisTestisTranscriptomeAnimalsGene Expression ProfilingHumansMaleSpermatogenesismale infertilitysingle-cell RNA-sequencing (Sc-RNA-seq)spatial transcriptomicsspermatogenesistestis

Identifiers

PMID39055054
PMCPMC11269108

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.