Evidence map›Paper›PMID 39054315›Full record

ArticleNature communications2024

Epigenetic memory is governed by an effector recruitment specificity toggle in Heterochromatin Protein 1.

Amanda Ames, Melissa Seman, Ajay Larkin, Gulzhan Raiymbek, Ziyuan Chen, Alex Levashkevich, Bokyung Kim, Julie Suzanne Biteen, Kaushik Ragunathan

Abstract read
In one paragraph

Article in Nature communications, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Characterization of the Swi6/HP1 binding motif in its partner protein reveals the basis for the functional divergence of the HP1 family proteins in fission yeast.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2025
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors.

Amanda AmesDepartment of Biology, Brandeis University, Waltham, MA, 02453, USA.ORCID 0000-0001-7105-6210
Melissa Seman *Department of Biology, Brandeis University, Waltham, MA, 02453, USA.
Ajay Larkin *Department of Biology, Brandeis University, Waltham, MA, 02453, USA.ORCID 0000-0002-5967-9535
Gulzhan RaiymbekDepartment of Biological Chemistry, University of Michigan, Ann Arbor, MI, 48109, USA.
Ziyuan ChenDepartment of Biophysics, University of Michigan, Ann Arbor, MI, 48104, USA.
Alex LevashkevichDepartment of Biology, Brandeis University, Waltham, MA, 02453, USA.
Bokyung KimDepartment of Biochemistry, Brandeis University, Waltham, MA, 02453, USA.
Julie Suzanne BiteenDepartment of Biophysics, University of Michigan, Ann Arbor, MI, 48104, USA.ORCID 0000-0003-2038-6484
Kaushik RagunathanDepartment of Biology, Brandeis University, Waltham, MA, 02453, USA. kaushikr@brandeis.edu.ORCID 0000-0003-4776-8589

Funding

CELLULAR AND MOLECULAR BIOLOGY AT MICHIGANT32GM007315 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PUTHENVEEDU, MANOJKUMAR A · 1985 to 2021
$12.8M
PREDOCTORAL TRAINING IN GENETICST32GM007544 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MORAN, JOHN V. · 1985 to 2022
$11.3M
Resource for Biocomputing Visualization and InformaticsP41GM103311 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI FERRIN, THOMAS E · 2012 to 2017
$8.2M
Heterochromatin dynamics during inheritance and adaptationR35GM137832 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Kaushik Ragunathan · 2020 to 2026
$3.2M
American Cancer Society (American Cancer Society, Inc.) ACSRSG22-117-01National Science Foundation (NSF) 2316281NIGMS NIH HHS P41 GM103311NIGMS NIH HHS R35 GM137832NIGMS NIH HHS T32 GM007315NIGMS NIH HHS T32 GM007544U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) R35GM137832
6 · The paper itself

Abstract

HP1 proteins are essential for establishing and maintaining transcriptionally silent heterochromatin. They dimerize, forming a binding interface to recruit diverse chromatin-associated factors. Although HP1 proteins are known to rapidly evolve, the extent of variation required to achieve functional specialization is unknown. To investigate how changes in amino acid sequence impacts heterochromatin formation, we performed a targeted mutagenesis screen of the S. pombe HP1 homolog, Swi6. Substitutions within an auxiliary surface adjacent to the HP1 dimerization interface produce Swi6 variants with divergent maintenance properties. Remarkably, substitutions at a single amino acid position lead to the persistent gain or loss of epigenetic inheritance. These substitutions increase Swi6 chromatin occupancy in vivo and altered Swi6-protein interactions that reprogram H3K9me maintenance. We show how relatively minor changes in Swi6 amino acid composition in an auxiliary surface can lead to profound changes in epigenetic inheritance providing a redundant mechanism to evolve HP1-effector specificity.

Indexed as

Chromosomal Proteins, Non-HistoneEpigenesis, GeneticHeterochromatinSchizosaccharomycesSchizosaccharomyces pombe ProteinsAmino Acid SequenceAmino Acid SubstitutionChromatinChromobox Protein Homolog 5Epigenetic MemoryHistonesProtein BindingChromatinChromobox Protein Homolog 5Chromosomal Proteins, Non-HistoneHeterochromatinHistonesSchizosaccharomyces pombe ProteinsSwi6 protein, S pombe

Identifiers

PMID39054315
PMCPMC11272775

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.