Evidence map›Paper›PMID 39051661›Full record

ArticleCerebral cortex (New York, N.Y. : 1991)2024

Disentangling transcriptomic heterogeneity within the human subgenual anterior cingulate cortex.

Aaron K Jenkins, Micah A Shelton, RuoFei Yin, Michael T Gorczyca, Wei Zong, Jill R Glausier, David A Lewis, George C Tseng, Marianne L Seney, Colleen A McClung

Abstract read
In one paragraph

Article in Cerebral cortex (New York, N.Y. : 1991), 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Aaron K JenkinsTranslational Neuroscience Program, Department of Psychiatry, University of Pittsburgh School of Medicine, 450 Technology Drive, Suite 223, Pittsburgh, PA 15219, United States.
Micah A SheltonTranslational Neuroscience Program, Department of Psychiatry, University of Pittsburgh School of Medicine, 450 Technology Drive, Suite 223, Pittsburgh, PA 15219, United States.
RuoFei YinDepartment of Biostatistics, University of Pittsburgh, 130 De Soto St, Pittsburgh, PA 15261, United States.
Michael T GorczycaDepartment of Biostatistics, University of Pittsburgh, 130 De Soto St, Pittsburgh, PA 15261, United States.ORCID 0000-0003-4790-4675
Wei ZongDepartment of Biostatistics, University of Pittsburgh, 130 De Soto St, Pittsburgh, PA 15261, United States.
Jill R GlausierTranslational Neuroscience Program, Department of Psychiatry, University of Pittsburgh School of Medicine, 450 Technology Drive, Suite 223, Pittsburgh, PA 15219, United States.
David A LewisTranslational Neuroscience Program, Department of Psychiatry, University of Pittsburgh School of Medicine, 450 Technology Drive, Suite 223, Pittsburgh, PA 15219, United States.ORCID 0000-0002-3225-6778
George C TsengDepartment of Biostatistics, University of Pittsburgh, 130 De Soto St, Pittsburgh, PA 15261, United States.
Marianne L SeneyTranslational Neuroscience Program, Department of Psychiatry, University of Pittsburgh School of Medicine, 450 Technology Drive, Suite 223, Pittsburgh, PA 15219, United States.ORCID 0000-0002-6401-9494
Colleen A McClungTranslational Neuroscience Program, Department of Psychiatry, University of Pittsburgh School of Medicine, 450 Technology Drive, Suite 223, Pittsburgh, PA 15219, United States.

Funding

Subject Management and BiobankingP50DA046346 · NIDA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Daniel J. Buysse, Colleen A McClung · 2020 to 2026
$23.4M
Plasticity of Auditory Cortical Circuits in SchizophreniaR01MH071533 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SWEET, ROBERT A · 2004 to 2018
$6.9M
Training for Transformative Discovery in PsychiatryT32MH016804 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SWEET, ROBERT A · 1985 to 2025
$6.2M
Identification of molecular rhythm changes in postmortem tissue from individuals with psychiatric illness. R01MH111601 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI Colleen A McClung, Marianne L Seney · 2018 to 2026
$5.5M
Role of NPAS2 in the nucleus accumbens in drug addictionR01DA039865 · NIDA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MCCLUNG, COLLEEN A · 2015 to 2024
$3.9M
Selective HDAC inhibition and therapeutic target genes: Identification of novel treatments for Bipolar DisorderR01MH106460 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MCCLUNG, COLLEEN A · 2016 to 2024
$3.6M
Sex-specific dendritic spine and microglia pathology in depressionR01MH120066 · NIMH · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI SENEY, MARIANNE L · 2019 to 2023
$1.9M
NIDA NIH HHS P50 DA046346NIDA NIH HHS R01 DA039865NIMH NIH HHS R01 MH071533NIMH NIH HHS R01 MH106460NIMH NIH HHS R01 MH111601NIMH NIH HHS R01 MH120066NIMH NIH HHS T32 MH016804
6 · The paper itself

Abstract

The subgenual anterior cingulate cortex (sgACC) is a critical site for understanding the neural correlates of affect and emotion. While the activity of the sgACC is functionally homogenous, it is comprised of multiple Brodmann Areas (BAs) that possess different cytoarchitectures. In some sgACC BAs, Layer 5 is sublaminated into L5a and L5b which has implications for its projection targets. To understand how the transcriptional profile differs between the BAs, layers, and sublayers of human sgACC, we collected layer strips using laser capture microdissection followed by RNA sequencing. We found no significant differences in transcript expression in these specific cortical layers between BAs within the sgACC. In contrast, we identified striking differences between Layers 3 and 5a or 5b that were concordant across sgACC BAs. We found that sublayers 5a and 5b were transcriptionally similar. Pathway analyses of L3 and L5 revealed overlapping biological processes related to synaptic function. However, L3 was enriched for pathways related to cell-to-cell junction and dendritic spines whereas L5 was enriched for pathways related to brain development and presynaptic function, indicating potential functional differences across layers. Our study provides important insight into normative transcriptional features of the sgACC.

Indexed as

Gyrus CinguliTranscriptomeAdultAgedFemaleHumansLaser Capture MicrodissectionMaleMiddle AgedYoung Adultdifferential expressionfunctional neuroanatomylaser capture microdissectionpostmortemRNA-sequencing

Identifiers

PMID39051661
PMCPMC11484492

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.