Evidence map›Paper›PMID 39050902›Full record

ArticleACS catalysis2024

Simulation-Guided Engineering Enables a Functional Switch in Selinadiene Synthase toward Hydroxylation.

Prabhakar L Srivastava, Sam T Johns, Angus Voice, Katharine Morley, Andrés M Escorcia, David J Miller, Rudolf K Allemann, Marc W van der Kamp

Abstract read
In one paragraph

Article in ACS catalysis, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Designed Water Capture in Terpene Synthase Catalysis.Chembiochem : a European journal of chemical biology · 2026
    Article
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Prabhakar L SrivastavaSchool of Chemistry, Cardiff University, Main Building, Park Place, Cardiff CF10 3AT, U.K.ORCID https://orcid.org/0000-0002-8219-6419
Sam T JohnsSchool of Biochemistry, University of Bristol, University Walk, Bristol BS8 1TD, U.K.
Angus VoiceSchool of Biochemistry, University of Bristol, University Walk, Bristol BS8 1TD, U.K.ORCID https://orcid.org/0000-0003-0640-1553
Katharine MorleySchool of Biochemistry, University of Bristol, University Walk, Bristol BS8 1TD, U.K.
Andrés M EscorciaSchool of Biochemistry, University of Bristol, University Walk, Bristol BS8 1TD, U.K.
David J MillerSchool of Chemistry, Cardiff University, Main Building, Park Place, Cardiff CF10 3AT, U.K.
Rudolf K AllemannSchool of Chemistry, Cardiff University, Main Building, Park Place, Cardiff CF10 3AT, U.K.
Marc W van der KampSchool of Biochemistry, University of Bristol, University Walk, Bristol BS8 1TD, U.K.ORCID https://orcid.org/0000-0002-8060-3359

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Engineering sesquiterpene synthases to form predefined alternative products is a major challenge due to their diversity in cyclization mechanisms and our limited understanding of how amino acid changes affect the steering of these mechanisms. Here, we use a combination of atomistic simulation and site-directed mutagenesis to engineer a selina-4(15),7(11)-diene synthase (SdS) such that its final reactive carbocation is quenched by trapped active site water, resulting in the formation of a complex hydroxylated sesquiterpene (selin-7(11)-en-4-ol). Initially, the SdS G305E variant produced 20% selin-7(11)-en-4-ol. As suggested by modeling of the enzyme-carbocation complex, selin-7(11)-en-4-ol production could be further improved by varying the pH, resulting in selin-7(11)-en-4-ol becoming the major product (48%) at pH 6.0. We incorporated the SdS G305E variant along with genes from the mevalonate pathway into bacterial BL21(DE3) cells and demonstrated the production of selin-7(11)-en-4-ol at a scale of 10 mg/L in batch fermentation. These results highlight opportunities for the simulation-guided engineering of terpene synthases to produce predefined complex hydroxylated sesquiterpenes.

Identifiers

PMID39050902
PMCPMC11264211

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.