Evidence map›Paper›PMID 39049651›Full record

ArticleHua xi kou qiang yi xue za zhi = Huaxi kouqiang yixue zazhi = West China journal of stomatology2024

Global analysis of DNA methylation changes during experimented lingual carcinogenesis.

Hua Liu, Wanyuan Yue, Shuai Shao, Jiaping Sun, Ying Yang, Xiaoming Dai

Abstract read
In one paragraph

Article in Hua xi kou qiang yi xue za zhi = Huaxi kouqiang yixue zazhi = West China journal of stomatology, 2024. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Hua LiuDept. of Oral and Maxillofacial Surgery, Affiliated Hospital of Yunnan University, Kunming 650021, China.
Wanyuan YueDept. of Oral and Maxillofacial Surgery, Affiliated Hospital of Yunnan University, Kunming 650021, China.
Shuai ShaoDept. of Oral and Maxillofacial Surgery, Affiliated Hospital of Yunnan University, Kunming 650021, China.
Jiaping SunDept. of Oral and Maxillofacial Surgery, Affiliated Hospital of Yunnan University, Kunming 650021, China.
Ying YangDept. of Pathology, First Affiliated Hospital of Kunming Medical University, Kunming 650031, China.
Xiaoming DaiMaxillofacial Service of Department of Plastic Surgery, First Affiliated Hospital of Kunming Medical University, Kunming 650031, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectivesThis study aims to assess the role of DNA methylation changes in tongue cancer through a comprehensive analysis of global DNA methylation alterations during experimental lingual carcinogenesis.

methodsC57BL/6J mice were subjected to 16-week oral administration of 4-nitroquinoline-1-oxide (4NQO, 50 mg/L). Lingual mucosa samples, being representative of normal tissue (week 0) and early (week 12) and advanced (week 28) tumorigenesis, were harvested for microarray and methylated DNA immunoprecipitation sequencing (MeDIP-Seq). The mRNA and promoter methylation of transforming growth factor-beta-signaling protein 1 (SMAD1) were evaluated with real-time quantitative reverse transcription polymerase chain reaction and Massarray in human lingual mucosa and tongue cancer cell lines.

resultsThe cytosine guanine island (CGI) methylation level observed at 28 weeks surpassed that of both 12 weeks and 0 weeks. The promoter methylation level at 12 weeks exceeded that at 0 weeks. Notably, 208 differentially expressed genes were negatively correlated to differential methylation in promoters among 0, 12, and 28 weeks. The mRNA of SMAD1 was upregulated, concurrent with a decrease in promoter methylation levels in cell lines compared to normal mucosa.

conclusionsDNA methylation changed during lingual carcinogenesis. Overexpression of SMAD1 was correlated to promoter hypomethylation in tongue cancer cell lines.

Indexed as

CarcinogenesisDNA MethylationMice, Inbred C57BLPromoter Regions, GeneticTongue Neoplasms4-Nitroquinoline-1-oxideAnimalsCell Line, TumorHumansMiceMouth Mucosa4-Nitroquinoline-1-oxideanimal modeldifferentially expressed genesmethylated DNA immunoprecipitation sequencingmethylationpathogenesistongue cancer

Identifiers

PMID39049651
PMCPMC11190864

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.